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AT4G32390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Drug/metabolite transporter superfamily protein (TAIR:AT2G25520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AL034567EMBL:AL161581EMBL:CP002687EnsemblPlants:AT4G32390EnsemblPlants:AT4G32390.1
entrez:829374GeneID:829374Genevisible:Q9SUV2GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0008643
GO:GO:0016021Gramene:AT4G32390.1hmmpanther:PTHR11132hmmpanther:PTHR11132:SF95HOGENOM:HOG000170162InParanoid:Q9SUV2InterPro:IPR004853
iPTMnet:Q9SUV2KEGG:ath:AT4G32390OMA:FFPWIFVPaxDb:Q9SUV2Pfam:PF03151Pfam:Q9SUV2PhylomeDB:Q9SUV2
PIR:T05349PRIDE:Q9SUV2PRO:PR:Q9SUV2ProteinModelPortal:Q9SUV2Proteomes:UP000006548RefSeq:NP_194965.1STRING:3702.AT4G32390.1
TAIR:AT4G32390TMHMM:TMhelixUniGene:At.54579UniProt:Q9SUV2
Coordinates (TAIR10) chr4:+:15636550..15637602
Molecular Weight (calculated) 39022.40 Da
IEP (calculated) 8.62
GRAVY (calculated) 0.59
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKGGALSDG VIKKILLSYT YVAIWIFLSF TVIVYNKYIL DKKMYNWPFP ITLTMIHMAF CSSLAVILIK VFKIVEPVSM SRDTYIRSVV PIGALYSLSL
101: WLSNSAYIYL SVSFIQMLKA LMPVAVYSIG VLLKKESFKS ETMTNMLSIS FGVAIAAYGE AKFDTWGVML QLGAVAFEAT RLVLIQILLT SKGINLNPIT
201: SLYYVAPCCL VFLFFPWIFV ELPILRETSS FHFDFVIFGT NSVCAFALNL AVFLLVGKTS ALTMNVAGVV KDWLLIAFSW SVIKDTVTPL NLFGYGLAFL
301: GVAYYNHCKL QALKAKDAQK KVQQGDEEEA GKLLEERESE AAAKRNETED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)