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AT4G28610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphate starvation response 1
Curator
Summary (TAIR10)
Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. Acts upstream of PHO2 in phosphate signaling.
Computational
Description (TAIR10)
phosphate starvation response 1 (PHR1); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT2G20400.1); Has 1692 Blast hits to 1675 proteins in 68 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 2; Plants - 1663; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEM5eggNOG:ENOG410YG61EMBL:AJ310799EMBL:AY081290
EMBL:BT002187EMBL:CP002687EnsemblPlants:AT4G28610EnsemblPlants:AT4G28610.1
entrez:828979Gene3D:1.10.10.60GeneID:828979GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0007623GO:GO:0016036GO:GO:0055063GO:GO:0071486
Gramene:AT4G28610.1hmmpanther:PTHR31314hmmpanther:PTHR31314:SF12HOGENOM:HOG000064669
InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930
InterPro:IPR025756KEGG:ath:AT4G28610ncoils:CoilOMA:EETRKCE
Pfam:PF00249Pfam:PF14379Pfscan:PS51294PhylomeDB:Q94CL7
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_194590.2SMR:Q94CL7
STRING:3702.AT4G28610.1SUPFAM:SSF46689TAIR:AT4G28610tair10-symbols:AtPHR1
tair10-symbols:PHR1TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.4525
UniProt:Q94CL7
Coordinates (TAIR10) chr4:-:14133164..14134951
Molecular Weight (calculated) 45548.80 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.91
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MEARPVHRSG SRDLTRTSSI PSTQKPSPVE DSFMRSDNNS QLMSRPLGQT YHLLSSSNGG AVGHICSSSS SGFATNLHYS TMVSHEKQQH YTGSSSNNAV
101: QTPSNNDSAW CHDSLPGGFL DFHETNPAIQ NNCQIEDGGI AAAFDDIQKR SDWHEWADHL ITDDDPLMST NWNDLLLETN SNSDSKDQKT LQIPQPQIVQ
201: QQPSPSVELR PVSTTSSNSN NGTGKARMRW TPELHEAFVE AVNSLGGSER ATPKGVLKIM KVEGLTIYHV KSHLQKYRTA RYRPEPSETG SPERKLTPLE
301: HITSLDLKGG IGITEALRLQ MEVQKQLHEQ LEIQRNLQLR IEEQGKYLQM MFEKQNSGLT KGTASTSDSA AKSEQEDKKT ADSKEVPEEE TRKCEELESP
401: QPKRPKIDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)