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AT4G20410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27936405 (2017): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gamma-soluble NSF attachment protein
Curator
Summary (TAIR10)
Encodes a member of the gamma-soluble NSF attachment protein (gSNAP) gene family.
Computational
Description (TAIR10)
gamma-soluble NSF attachment protein (GSNAP); FUNCTIONS IN: transporter activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NSF attachment protein (InterPro:IPR000744), Tetratricopeptide-like helical (InterPro:IPR011990); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:827789eggNOG:ENOG410ZYD7eggNOG:KOG1585EMBL:AK317666
EMBL:BT024855EnsemblPlants:AT4G20410EnsemblPlants:AT4G20410.1entrez:827789
ExpressionAtlas:Q24JN4Gene3D:1.25.40.10GeneID:827789GO:GO:0005622
GO:GO:0006886Gramene:AT4G20410.1hmmpanther:PTHR13768hmmpanther:PTHR13768:SF2
InterPro:IPR000744InterPro:IPR011990KEGG:ath:AT4G20410OMA:WNEVADF
PANTHER:PTHR13768Pfam:PF14938Pfam:Q9SPE5PhylomeDB:Q24JN4
RefSeq:NP_567600.1SMR:Q24JN4STRING:3702.AT4G20410.1SUPFAM:SSF48452
TAIR:AT4G20410tair10-symbols:GAMMA-SNAPtair10-symbols:GSNAPUniGene:At.22040
UniProt:Q24JN4UniProt:Q9SPE5
Coordinates (TAIR10) chr4:-:11014099..11016454
Molecular Weight (calculated) 32362.00 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.46
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSDPDKMMS KADKMTKLTL TRWSADWRGA TELYEQAANG FRASNKYEKA KVALEKASKG QEMQASPWDA AKHMESAAAL AQKLSIWNEV ADFYRKASEL
101: YVECGRAQPA SDALGKAARA LEDVKPDDAI QLYTDACEIL EEDGRDQMAF DLYRACANVY IKLEKFTDAA TFFLRLGVAA DKCDATNSQC KAYLSAIILY
201: LYAHDLQQAE KCYNDCSQID AFLKSDQSRS ASRLLTAYNE GDIEEIKKVA SASTVSNLDH MIIKLARKLP TGDVTAIQMN TNDDLDEDDL T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)