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AT4G10170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.569
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNARE-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT1G33475.1); Has 286 Blast hits to 286 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:NOG265054EMBL:AK227497EMBL:AL049487EMBL:AL161516
EMBL:BT004609EMBL:CP002687EnsemblPlants:AT4G10170EnsemblPlants:AT4G10170.1
EnsemblPlants:AT4G10170.2entrez:826608Gene3D:3.30.450.50GeneID:826608
GO:GO:0005886GO:GO:0015031GO:GO:0016021Gramene:AT4G10170.1
Gramene:AT4G10170.2hmmpanther:PTHR21136hmmpanther:PTHR21136:SF88HOGENOM:HOG000070619
InterPro:IPR010908InterPro:IPR011012iPTMnet:Q9SN26KEGG:ath:AT4G10170
OMA:KMPHAAFPfscan:PS50859PhylomeDB:Q9SN26PIR:T04067
PROSITE:PS50859ProteinModelPortal:Q9SN26Proteomes:UP000006548RefSeq:NP_192755.1
RefSeq:NP_974527.1SMART:SM01270STRING:3702.AT4G10170.1SUPFAM:SSF64356
TAIR:AT4G10170TMHMM:TMhelixUniGene:At.33648UniProt:Q9SN26
Coordinates (TAIR10) chr4:+:6344587..6345351
Molecular Weight (calculated) 28362.70 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.31
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)