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AT4G02930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:22923678 (2012): mitochondrion
  • PMID:22318864 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17137349 (2006): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP binding Elongation factor Tu family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP binding Elongation factor Tu family protein; FUNCTIONS IN: translation elongation factor activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1B (TAIR:AT4G20360.1); Has 89361 Blast hits to 89296 proteins in 17600 species: Archae - 1195; Bacteria - 40691; Metazoa - 19476; Fungi - 9897; Plants - 2075; Viruses - 6; Other Eukaryotes - 16021 (source: NCBI BLink).
Protein Annotations
BioGrid:13423eggNOG:COG0050eggNOG:KOG0460EMBL:AC004044EMBL:AF069442EMBL:AL161495EMBL:AY136421
EMBL:BT008755EMBL:CP002687EMBL:F14375EMBL:X89227EnsemblPlants:AT4G02930EnsemblPlants:AT4G02930.1entrez:828134
ExpressionAtlas:Q0WUV8ExpressionAtlas:Q9ZT91Gene3D:3.40.50.300GeneID:828134Genevisible:Q9ZT91GO:GO:0003746GO:GO:0003924
GO:GO:0005524GO:GO:0005525GO:GO:0005618GO:GO:0005739GO:GO:0008270GO:GO:0046686GO:GO:0050897
Gramene:AT4G02930.1HAMAP:MF_00118_Bhmmpanther:PTHR23115hmmpanther:PTHR23115:SF155HOGENOM:HOG000229290InterPro:IPR000795InterPro:IPR004160
InterPro:IPR004161InterPro:IPR004541InterPro:IPR005225InterPro:IPR009000InterPro:IPR009001InterPro:IPR027417InterPro:IPR031157
KEGG:ath:AT4G02930KO:K02358OMA:LLTFYKFPaxDb:Q9ZT91Pfam:PF00009Pfam:PF03143Pfam:PF03144
Pfam:Q9ZT91Pfscan:PS51722PhylomeDB:Q9ZT91PIR:T01400PRIDE:Q9ZT91PRINTS:PR00315PRO:PR:Q9ZT91
PROSITE:PS00301PROSITE:PS51722ProteinModelPortal:Q9ZT91Proteomes:UP000006548RefSeq:NP_192202.1scanprosite:PS00301SMR:Q9ZT91
STRING:3702.AT4G02930.1SUPFAM:SSF50447SUPFAM:SSF50465SUPFAM:SSF52540TAIR:AT4G02930TIGRfam:TIGR00231TIGRfam:TIGR00485
TIGRFAMs:TIGR00231TIGRFAMs:TIGR00485UniGene:At.22275UniProt:Q0WUV8UniProt:Q9ZT91
Coordinates (TAIR10) chr4:-:1295751..1298354
Molecular Weight (calculated) 49412.80 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.12
Length 454 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)