AT3G56930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.711 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DHHC-type zinc finger family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G05070.1); Has 5165 Blast hits to 5156 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 2209; Fungi - 768; Plants - 846; Viruses - 2; Other Eukaryotes - 1340 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21073805..21075873 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54780.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.56 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 477 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAWNETKLKR LYQVWRGSNK FLCGGRLIFG PDASSLYLST ILILGPAVMF FVKMYTKMAD PRTKNPNLCI PILCVSWILT ILDIFFLLMT SSRDPGIVPR 101: SFRPPETDDA PDSTTPSMEW VSGRTPNIRI PRVKDVTVNG HTVKVKFCDT CLLYRPPRAS HCSICNNCVQ RFDHHCPWVG QCIGVRNYRF FFMFISTSTT 201: LCIYVFAFSW LNIFQRHMDE KISIWKAISK DVLSDILIVY CFITVWFVGG LTIFHSYLIC TNQTTYENFR YRYDKKENPY NKGILGNIWE IFLSKIPPSM 301: NKFRSFVKEE DYMMMMVETP TSNLGESLVS SKEKIDIEMG GGRIVDESGK SYSLPEILRN LNYEDLEDDC EEDDLKAKDH HHHHHHQHQH NEGIIPPFDP 401: FFTNEIGSNK DERNGEESGG SSSDGENTGK RVRVSDEDEE KVEGYERNWS TDKGMNINAG SEDGASSPVS TSPMLRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)