suba logo
AT3G51110.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 4310 Blast hits to 1959 proteins in 231 species: Archae - 3; Bacteria - 10; Metazoa - 1644; Fungi - 1320; Plants - 755; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQJFeggNOG:KOG1915EMBL:CP002686EnsemblPlants:AT3G51110EnsemblPlants:AT3G51110.1entrez:824275Gene3D:1.25.40.10
GeneID:824275GO:GO:0006396Gramene:AT3G51110.1hmmpanther:PTHR11246hmmpanther:PTHR11246:SF14InParanoid:F4J390InterPro:IPR003107
InterPro:IPR011990InterPro:IPR013026KEGG:ath:AT3G51110OMA:CHPKASSPaxDb:F4J390Pfam:PF02184Pfscan:PS50293
PRIDE:F4J390PROSITE:PS50293ProteinModelPortal:F4J390Proteomes:UP000006548RefSeq:NP_566944.1SMART:SM00386STRING:3702.AT3G51110.1
SUPFAM:SSF48452TAIR:AT3G51110UniGene:At.857UniProt:F4J390
Coordinates (TAIR10) chr3:+:18983711..18984952
Molecular Weight (calculated) 50111.80 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.69
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMIPRMVKN KTPAPVQITA EQVLKEARER EDSRILRPPK QKITDSDELA EYRLRRRKEF EDQIRGAKTN SQVWVRYADW EESQKDHDRA RSVWERALED
101: ESYRNHTLWL KYAEFEMRNK SVNHARNVWD RAVKILPRVD QFWYKYIHME EILGNIDGAR KIFERWMDWS PDQQAWLCFI KFELRYNEIE RSRSIYERFV
201: LCHPKASSFI RYAKFEMKNS QVSLARIVYE RAIEMLKDVE EEAEMIFVAF AEFEELCKEV ERARFLYKYA LDHIPKGRAE DLYKKFVAFE KQYGNKEGID
301: DAIVGRRKLQ YEGEVRKNPL NYDSWFDYIS LEETLGDKDR IREVYERAIA NVPLAEEKRY WQRYIYLWID YALFEEILAE DVERTRAVYR ECLNLIPSLQ
401: ILFCQDMVAR CTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)