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AT3G46560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24727099 (2014): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:14730085 (2004): mitochondrion
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g46560-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tim10/DDP family zinc finger protein
Curator
Summary (TAIR10)
Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.
Computational
Description (TAIR10)
TIM9; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like (InterPro:IPR004217); Has 542 Blast hits to 542 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 275; Fungi - 165; Plants - 60; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111TUAeggNOG:KOG3479EMBL:AF150111EMBL:AL133314
EMBL:AY045940EMBL:AY079412EMBL:AY088670EMBL:CP002686
EnsemblPlants:AT3G46560EnsemblPlants:AT3G46560.1entrez:823809Gene3D:1.10.287.810
GeneID:823809Genevisible:Q9XGX9GO:GO:0005739GO:GO:0005758
GO:GO:0007005GO:GO:0008565GO:GO:0042719GO:GO:0042721
GO:GO:0045039GO:GO:0046872GO:GO:0072321Gramene:AT3G46560.1
hmmpanther:PTHR10898HOGENOM:HOG000185786InParanoid:Q9XGX9InterPro:IPR004217
KEGG:ath:AT3G46560KO:K17777OMA:MIGDLDSPaxDb:Q9XGX9
Pfam:PF02953Pfam:Q9XGX9PhylomeDB:Q9XGX9PIR:T45593
PIR:T51187PRIDE:Q9XGX9PRO:PR:Q9XGX9ProteinModelPortal:Q9XGX9
Proteomes:UP000006548RefSeq:NP_190240.1SMR:Q9XGX9STRING:3702.AT3G46560.1
SUPFAM:SSF144122TAIR:AT3G46560tair10-symbols:emb2474tair10-symbols:TIM9
UniGene:At.592UniProt:Q9XGX9
Coordinates (TAIR10) chr3:+:17138632..17139301
Molecular Weight (calculated) 10716.00 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.48
Length 93 amino acids
Sequence (TAIR10)
(BLAST)
1: MDASMMAGLD GLPEEDKAKM ASMIDQLQLR DSLRMYNSLV ERCFVDCVDS FTRKSLQKQE ETCVMRCAEK FLKHTMRVGM RFAELNQNAP TQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)