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AT3G27810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 21
Curator
Summary (TAIR10)
Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development.
Computational
Description (TAIR10)
myb domain protein 21 (MYB21); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 24 (TAIR:AT5G40350.1); Has 8792 Blast hits to 8049 proteins in 467 species: Archae - 0; Bacteria - 0; Metazoa - 785; Fungi - 472; Plants - 5782; Viruses - 6; Other Eukaryotes - 1747 (source: NCBI BLink).
Protein Annotations
BioGrid:7731eggNOG:COG5147eggNOG:KOG0048EMBL:AB005888
EMBL:AB018114EMBL:AB493635EMBL:AF062870EMBL:AK118439
EMBL:AP000371EMBL:AY519589EMBL:CP002686EnsemblPlants:AT3G27810
EnsemblPlants:AT3G27810.1entrez:822401Gene3D:1.10.10.60GeneID:822401
Genevisible:Q9LK95GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009585GO:GO:0009740GO:GO:0009753
GO:GO:0009867GO:GO:0048443GO:GO:0080086Gramene:AT3G27810.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF531HOGENOM:HOG000237600InParanoid:Q9LK95
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G27810
KO:K09422OMA:ADYSIPMPaxDb:Q9LK95Pfam:PF00249
Pfam:Q9LK95Pfscan:PS51294PhylomeDB:Q9LK95PIR:T51642
PRO:PR:Q9LK95PROSITE:PS51294ProteinModelPortal:Q9LK95Proteomes:UP000006548
RefSeq:NP_189418.2SMART:SM00717SMR:Q9LK95STRING:3702.AT3G27810.1
SUPFAM:SSF46689TAIR:AT3G27810tair10-symbols:ATMYB21tair10-symbols:ATMYB3
tair10-symbols:MYB21UniGene:At.226UniProt:Q9LK95
Coordinates (TAIR10) chr3:+:10307596..10310093
Molecular Weight (calculated) 25352.40 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.75
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKRGGGSSG GSGSSAEAEV RKGPWTMEED LILINYIANH GDGVWNSLAK SAGLKRTGKS CRLRWLNYLR PDVRRGNITP EEQLIIMELH AKWGNRWSKI
101: AKHLPGRTDN EIKNFWRTRI QKYIKQSDVT TTSSVGSHHS SEINDQAAST SSHNVFCTQD QAMETYSPTP TSYQHTNMEF NYGNYSAAAV TATVDYPVPM
201: TVDDQTGENY WGMDDIWSSM HLLNGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)