suba logo
AT3G22430.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEZ1eggNOG:ENOG410Y99ZEMBL:CP002686EnsemblPlants:AT3G22430EnsemblPlants:AT3G22430.1entrez:821813GeneID:821813
GO:GO:0031047Gramene:AT3G22430.1hmmpanther:PTHR21596hmmpanther:PTHR21596:SF11InParanoid:F4J099InterPro:IPR005380iPTMnet:F4J099
KEGG:ath:AT3G22430OMA:LGNKAMDPaxDb:F4J099Pfam:PF03468PRIDE:F4J099ProteinModelPortal:F4J099Proteomes:UP000006548
RefSeq:NP_566707.2TAIR:AT3G22430UniGene:At.6270UniProt:F4J099
Coordinates (TAIR10) chr3:+:7953455..7957605
Molecular Weight (calculated) 57073.70 Da
IEP (calculated) 10.29
GRAVY (calculated) -0.89
Length 510 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGSNNNAKS STNKPPATSI PTAAASSSQN HKPRVNSTNN DGGISNNNNN NKKESKPMMI GVQKTADKKP LKPNPSPKLA PIPKQSNPNH QNQTGPSSSR
101: PMAPFPFPDS SPALGPPPQP TYGFHMLERR TIVLADGSVR SYFALPPNYM DFPPQSRLAG PVFGRFPPFY PEEFRDQRMK RKYPGEEEID RRDERAEMMR
201: QRQQFMQYAN PNDHSFMAGT SRDVGEDVRA AKHMRVGSSR HDNGGFQVDQ VALKKSFLGF VKRVFEDPME KKNYLENGRK GRLQCLVCGR SSKDVQDTHS
301: LVMHTYCSDD SSSRVHHLGL HKALCVLMGW NFSKAPDNSK AYQNLPADEA AINQAQLIIW PPHVIVQNTS TGKGKEGRME GFGNKTMDNR IRELGLTGGK
401: SKSLYGREGH LGITLFKFAG DDSGLRDAMR MAEYFEKINR GRKSWGRVQP LTPSKDDEKN PGLVEVDGRT GEKKRIFYGY LATVTDLDKV DVETKKKTTI
501: ESLRELTRTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)