AT3G21720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : isocitrate lyase | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
isocitrate lyase (ICL); FUNCTIONS IN: isocitrate lyase activity, catalytic activity; INVOLVED IN: carboxylic acid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, seed, leaf; CONTAINS InterPro DOMAIN/s: Isocitrate lyase/phosphorylmutase, conserved site (InterPro:IPR018523), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase (InterPro:IPR006254), Isocitrate lyase/phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G77060.1); Has 9953 Blast hits to 7473 proteins in 1388 species: Archae - 150; Bacteria - 5572; Metazoa - 28; Fungi - 504; Plants - 171; Viruses - 0; Other Eukaryotes - 3528 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7652789..7655873 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64248.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.20 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 576 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAASFSVPSM IMEEEGRFEA EVAEVQTWWS SERFKLTRRP YTARDVVALR GHLKQGYASN EMAKKLWRTL KSHQANGTAS RTFGALDPVQ VTMMAKHLDT 101: IYVSGWQCSS THTSTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQRE ARMSMSREER TKTPFVDYLK PIIADGDTGF GGTTATVKLC KLFVERGAAG 201: VHIEDQSSVT KKCGHMAGKV LVAVSEHINR LVAARLQFDV MGTETVLVAR TDAVAATLIQ SNIDARDHQF ILGATNPSLR GKSLSSLLAE GMTVGKNGPA 301: LQSIEDQWLG SAGLMTFSEA VVQAIKRMNL NENEKNQRLS EWLTHARYEN CLSNEQGRVL AAKLGVTDLF WDWDLPRTRE GFYRFQGSVA AAVVRGWAFA 401: QIADIIWMET ASPDLNECTQ FAEGIKSKTP EVMLAYNLSP SFNWDASGMT DQQMVEFIPR IARLGYCWQF ITLAGFHADA LVVDTFAKDY ARRGMLAYVE 501: RIQREERTHG VDTLAHQKWS GANYYDRYLK TVQGGISSTA AMGKGVTEEQ FKESWTRPGA DGMGEGTSLV VAKSRM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)