AT3G16760.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.996 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-III (TAIR:AT3G17970.1); Has 16833 Blast hits to 9400 proteins in 880 species: Archae - 41; Bacteria - 5141; Metazoa - 4120; Fungi - 1882; Plants - 1008; Viruses - 50; Other Eukaryotes - 4591 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:5703213..5705080 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48831.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||
| Length | 475 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSNFGKRSS GSTNSFDFDL GLGSSQGRPL NGQKSQTSSY SSSNSQPRPA WQPGKPSWTH QPAPKQSTIR SEIGSGPTSM VGDIHGKTWG SASGSGSGIG 101: IVNKDPSLFG DLVGSAIGQG KSSRNVPLKN APPVSASGSS KSPYSMGNLG DSLPKSGNSM KTGGGMGYSS NPSGFSGGYT SSGGFNANLG GPSMKNMAGG 201: NLNGSGLPSN SDPFGSLVGF GSKSSGSKPG KVNNNAQNDT FGNFQGVSNL NSGGSTGTTT QINDFGGFQA SKSNTFSSGG SFNASNVDFG VQPSGPQSSS 301: ANDDPLGMFS NSKPSAAPPT PQTEDWGFES FDGGAGSTTE LDGLPPPPPG VSATSAKNKG IDNQRQGQYA DAIKWLSWAV ILMDRAGDEA GSAEVLSTRA 401: SCYKEVGEYK KAVADCTKVL DHDKKNVTIL VQRALLYESM EKYKLGAEDL RMVLKIDPGN RIARSTVHRL TKMAG |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)