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AT3G06670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.608
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49390.1); Has 3148 Blast hits to 2569 proteins in 332 species: Archae - 0; Bacteria - 112; Metazoa - 1464; Fungi - 567; Plants - 205; Viruses - 18; Other Eukaryotes - 782 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ7AeggNOG:KOG2175EMBL:AY094413EMBL:BT003011EMBL:CP002686EnsemblPlants:AT3G06670EnsemblPlants:AT3G06670.1
entrez:819852ExpressionAtlas:Q8LPS4GeneID:819852Gramene:AT3G06670.1hmmpanther:PTHR23318hmmpanther:PTHR23318:SF0HOGENOM:HOG000231303
InterPro:IPR006887InterPro:IPR011993InterPro:IPR016024Pfam:PF04802PhylomeDB:Q8LPS4Proteomes:UP000006548RefSeq:NP_187323.2
SMR:Q8LPS4STRING:3702.AT3G06670.2SUPFAM:SSF48371SUPFAM:SSF50729TAIR:AT3G06670UniGene:At.43499UniGene:At.69017
UniProt:Q8LPS4
Coordinates (TAIR10) chr3:-:2105908..2113136
Molecular Weight (calculated) 97295.60 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.37
Length 865 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAPEKSQSN TNSMQRVKVY HLNEDGKWDD RGTGHVSIDF VERSEELSLC VIDEEDNETL LVHPINPEDI YRKQEDTIIS WRDPERSTEL ALSFQETAGC
101: SYVWDQICTM QRNLHFSSLN SETFHSLNSE LRELPAVELT TLPLILKIVT ESGITDQMRL TELILKDHDF FRNLMGVFKI CEDLENVDGL HMIFNIVKGI
201: ILLNSSQILE KIFGDELIME IIGCLEYDPG VPHSQHHRNF LKEHVVFKEA IPIKDPLVLS KIHQTYRIGY LKDVVLARVL DDAIVANLNS VIHANNAIVV
301: SLLKDDSTFI QELFARLRSP STSMESKKNL VYFLHEFCSL SKSLQVVQQL RLFRDLINEG IFHVIEEVLQ IPDKKLVLTG TDILILFLTQ DPNLLRSYVV
401: RTEGNPLLGL LVKGMMEDFG DKMHCQFLEI IRTLLDANAL SGGAQRANIM DIFYEKHLPE LVDVITASCP EKSSNASEGA ARRIFTKPEV LLNICELLCF
501: CIMQDASRTK CSFLQNNVTE KVLHLTRRKE KYLVVAAIRF VRTLLSVHDD YVQNYVVKNN LLKPIIDVFI ANGTRYNLLN SAVLDLLEHI RKGNATLLLK
601: YIVDTFWDQL APFQCLTSIQ AFKVKYEQCL ESAGPKSTSD AVDPRRRVDE RALEKEEEDY FNEDSDEEDS ASASNTQKEK PASNIQKEQP KPHLSNGVAA
701: SPTSSSPRSG GLVDYEDDED DEDYKPPPRK QPEASEDEEG ELLRLKRKSA LVEREQEPSK KPRLGKSSKR ENVFAVLCST LSHAVLTGKK SPGPAGSAAR
801: SIVAKGAEDS KSSEENNSSS SDDENHKDDG VSSSEHETSD NGKLNGEESL VVAPKSSPEM AVNGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)