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AT3G06190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.761
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BTB-POZ and MATH domain 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB-POZ and MATH domain 2 (BPM2); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 5905 Blast hits to 5761 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 4114; Fungi - 49; Plants - 1477; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).
Protein Annotations
BioGrid:5128eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AC018907EMBL:AY045891EMBL:AY091449EMBL:CP002686
EnsemblPlants:AT3G06190EnsemblPlants:AT3G06190.1entrez:819793ExpressionAtlas:Q9M8J9Gene3D:2.60.210.10GeneID:819793Genevisible:Q9M8J9
GO:GO:0005634GO:GO:0006970GO:GO:0016567GO:GO:0042631GO:GO:0071472hmmpanther:PTHR24411hmmpanther:PTHR24411:SF33
HOGENOM:HOG000220921InParanoid:Q9M8J9IntAct:Q9M8J9InterPro:IPR000210InterPro:IPR002083InterPro:IPR008974InterPro:IPR011333
KEGG:ath:AT3G06190KO:K10523MINT:MINT-7262920OMA:AGMNEHAPaxDb:Q9M8J9Pfam:PF00651Pfam:Q9M8J9
Pfscan:PS50097Pfscan:PS50144PhylomeDB:Q9M8J9PRIDE:Q9M8J9PRO:PR:Q9M8J9PROSITE:PS50097PROSITE:PS50144
ProteinModelPortal:Q9M8J9Proteomes:UP000006548Reactome:R-ATH-5632684RefSeq:NP_566275.1SMART:SM00061SMART:SM00225SMR:Q9M8J9
STRING:3702.AT3G06190.1SUPFAM:SSF49599SUPFAM:SSF54695TAIR:AT3G06190tair10-symbols:ATBPM2tair10-symbols:BPM2UniGene:At.24125
UniPathway:UPA00143UniProt:Q9M8J9
Coordinates (TAIR10) chr3:-:1874577..1876575
Molecular Weight (calculated) 45161.10 Da
IEP (calculated) 7.10
GRAVY (calculated) -0.16
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTIRVSKEV PGSSKSTAQS LTESTSRTET INGSHEFKIS GYSLVKGMGI GKYVASDTFM VGGYSWAIYF YPDGKSPEDN SVYVSLFIAL ASEGADVRAL
101: FELTLVDQSG NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRSLLE SSDYLKDNGL LVRCCVGVVK SRTEGPRCYN IPVPVSGLGQ QFGKLLESGK
201: GADVTFEVDG ETFPAHKLVL AARSAVFRAQ LFGPLRSENT NCIIIEDVQA PIFKMLLHFI YWDEMPDMQD LIGTDLKWAS TLVAQHLLAA ADRYALERLR
301: TICESKLCEG ISINTVATTL ALAEQHHCFQ LKAACLKFIA LPENLKAVME TDGFDYLKES CPSLLSELLE YVARLSEHSL TSSGHRKELF ADGCDLNGRR
401: VKQRLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)