suba logo
AT3G02650.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62680.1); Has 34543 Blast hits to 12438 proteins in 283 species: Archae - 5; Bacteria - 31; Metazoa - 472; Fungi - 472; Plants - 32537; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC021640EMBL:BX836963EMBL:CP002686EnsemblPlants:AT3G02650EnsemblPlants:AT3G02650.1
entrez:821285Gene3D:1.25.40.10GeneID:821285Genevisible:P0C896GO:GO:0005739Gramene:AT3G02650.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF751HOGENOM:HOG000233215InParanoid:P0C896InterPro:IPR002885InterPro:IPR011990iPTMnet:P0C896KEGG:ath:AT3G02650
OMA:AKGLMRVPaxDb:P0C896Pfam:P0C896Pfam:PF01535Pfam:PF13041Pfscan:PS51375PhylomeDB:P0C896
PRIDE:P0C896PRO:PR:P0C896PROSITE:PS51375ProteinModelPortal:P0C896Proteomes:UP000006548RefSeq:NP_186914.2SMR:P0C896
STRING:3702.AT3G02650.1TAIR:AT3G02650TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.41101UniProt:P0C896
Coordinates (TAIR10) chr3:+:568135..569865
Molecular Weight (calculated) 63841.40 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.20
Length 576 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRSFLCRSQ NASRNLAVTR ISKKKTQTTH SLTSLSRFSY LESSGNASVR NIRFFSTSPP TEENPVSLPA DEIPISSAAE LTLEESVASA LGFSESGDYG
101: GTSVEAVGED GDSEIVAIEN EVYQFDDEKL ESVLSLLRSD EESLEFGLNA LNVDLHLDFV VRVFESPGIS GKNLIRFLKW ATQNEEITVT TSLVESLLVA
201: IASDTRRMDA YGLWDLVKEI GEKESCGVLN LEILNELIAL FGKLGKSKAA FDVFSKTEEF GFTPNAKTYY LTLEALCKRS FMDWACSVCE KMLKSGVLSE
301: GEQMGNIITW FCKEGKAEEA YSVYELAKTK EKSLPPRFVA TLITALCKND GTITFAQEML GDLSGEARRR GIKPFSDVIH SLCRMRNVKD AKALLLDMIS
401: KGPAPGNAVF NLVVHACSKT GDLDEAKEVL KLMESRGLKP DVYTYTVIIS GYAKGGMMDE AQEILAEAKK KHKKLSPVTY HALIRGYCKI EEYDEALKLL
501: NEMDRFGVQP NADEYNKLIQ SFCLKALDWE KAEVLFEEMK QKGLHLNAIS QGLIRAVKEM ESEAKVTEDG NLLAEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)