suba logo
AT2G47980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sister-chromatid cohesion protein 3
Curator
Summary (TAIR10)
Essential to the monopolar orientation of the kinetochores during meiosis.
Computational
Description (TAIR10)
sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
BioGrid:4745eggNOG:COG5537eggNOG:KOG2011EMBL:AC005309
EMBL:AC006072EMBL:AJ242965EMBL:AY063915EMBL:AY084846
EMBL:AY091270EMBL:CP002685EnsemblPlants:AT2G47980EnsemblPlants:AT2G47980.1
entrez:819410Gene3D:1.25.10.10GeneID:819410Genevisible:O82265
GO:GO:0005634GO:GO:0005694GO:GO:0007067GO:GO:0051301
GO:GO:0051455GO:GO:0051754Gramene:AT2G47980.1hmmpanther:PTHR11199
hmmpanther:PTHR11199:SF0HOGENOM:HOG000084043InParanoid:O82265IntAct:O82265
InterPro:IPR011989InterPro:IPR013721InterPro:IPR016024InterPro:IPR020839
iPTMnet:O82265KEGG:ath:AT2G47980KO:K06671ncoils:Coil
OMA:IGRMLQIPaxDb:O82265Pfam:O82265Pfam:PF08514
Pfscan:PS51425PhylomeDB:O82265PIR:H84921PRIDE:O82265
PRO:PR:O82265PROSITE:PS51425ProteinModelPortal:O82265Proteomes:UP000006548
Reactome:R-ATH-2468052Reactome:R-ATH-2470946RefSeq:NP_566119.1STRING:3702.AT2G47980.1
SUPFAM:SSF48371TAIR:AT2G47980tair10-symbols:ATSCC3tair10-symbols:SCC3
UniGene:At.436UniGene:At.71162UniProt:O82265
Coordinates (TAIR10) chr2:+:19631423..19636795
Molecular Weight (calculated) 125766.00 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.46
Length 1098 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)