AT2G42320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleolar protein gar2-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nucleolar protein gar2-related; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57780.1); Has 15829 Blast hits to 1361 proteins in 222 species: Archae - 4; Bacteria - 14530; Metazoa - 601; Fungi - 195; Plants - 122; Viruses - 6; Other Eukaryotes - 371 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17628102..17630657 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74215.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.66 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||
| Length | 669 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKARTTNNVV QSKRSTKSVR KDQKLQKTNS QKKTEQEKHK DLDTKEESSN ISTVASDSTI QSDPSESYET VDVRYLDDDN GVIASADAHQ ESDSSSVVDK 101: TEKEHNLSGS ICDLEKDVDE QECKDANIDK DAREGISADV WEDASNGALS AGSENEAADV TENNGGNFED GSSEEKIERL ETRIEKLEEE LREVAALEIS 201: LYSVVPDHCS SAHKLHTPAR RISRIYIHAC KHFTQGKRAT IARNSVSGLV LVAKSCGNDV SRLTFWLSNI IALRQIISQA FGRSRITQIS EPNESGNSDS 301: GKKTNLRWKN GFQQLLEDWQ ETETFTTALE KIEFWVFSRI VESVWWQVFT PHMQSPEDDS SASKSNGKLM GPSLGDQNQG TFSISLWKNA FRDALQRICP 401: MRGAGHECGC LPVLARMVMD KCIGRFDVAM FNAILRESEH QIPTDPVSDP ILDSKVLPIP AGDLSFGSGA QLKNAIGNWS RCLTEMFGMN SDDSSAKEKR 501: NSEDDHVESK AFVLLNELSD LLMLPKDMLM EISIREEICP SISLPLIKRI LCNFTPDEFC PDQVPGAVLE ELNAAESIGD RKLSEASFPY AASSVSYMPP 601: STMDIAEKVA EASAKLSRNV SMIQRKGYTS DEELEELDSP LTSIVDKASD FTGSATSNAR YKLLRQVWV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)