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AT2G35860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan protein 16 precursor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan protein 16 precursor (FLA16); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 15 precursor (TAIR:AT3G52370.1); Has 1005 Blast hits to 970 proteins in 256 species: Archae - 17; Bacteria - 426; Metazoa - 148; Fungi - 43; Plants - 238; Viruses - 1; Other Eukaryotes - 132 (source: NCBI BLink).
Protein Annotations
BioGrid:3503eggNOG:COG2335eggNOG:KOG1437EMBL:AC007017
EMBL:AY093189EMBL:BT006590EMBL:CP002685EnsemblPlants:AT2G35860
EnsemblPlants:AT2G35860.1entrez:818159Gene3D:2.30.180.10GeneID:818159
Genevisible:Q8RWC5GO:GO:0005576Gramene:AT2G35860.1hmmpanther:PTHR32499
hmmpanther:PTHR32499:SF3HOGENOM:HOG000240476InParanoid:Q8RWC5InterPro:IPR000782
KEGG:ath:AT2G35860OMA:EVACRMMPaxDb:Q8RWC5Pfam:PF02469
Pfam:Q8RWC5Pfscan:PS50213PhylomeDB:Q8RWC5PIR:H84773
PRIDE:Q8RWC5PRO:PR:Q8RWC5PROSITE:PS50213ProteinModelPortal:Q8RWC5
Proteomes:UP000006548RefSeq:NP_850253.1SMART:SM00554SMR:Q8RWC5
STRING:3702.AT2G35860.1SUPFAM:SSF82153TAIR:AT2G35860tair10-symbols:FLA16
UniGene:At.27800UniProt:Q8RWC5
Coordinates (TAIR10) chr2:+:15059859..15061810
Molecular Weight (calculated) 49103.20 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.22
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSYGATKF LLLLFLTTSI ATALPDNKPV PGQINSNSVL VALLDSHYTE LAELVEKALL LQTLEEAVGK HNITIFAPRN DALERNLDPL FKSFLLEPRN
101: LKSLQSLLMF HILPKRITSP QWPSLSHHHR TLSNDHLHLT VDVNTLKVDS AEIIRPDDVI RPDGIIHGIE RLLIPRSVQE DFNRRRSLRS ISAVIPEGAP
201: EVDPRTHRLK KPSPAVPAGA PPVLPIYDAM SPGPSLAPAP APGPGGPRGH FNGDAQVKDF IHTLLHYGGY NEMADILVNL TSLATEMGRL VSEGYVLTVL
301: APNDEAMAKL TTDQLSEPGA PEQIMYYHII PEYQTEESMY NAVRRFGKVK YDSLRFPHKV LAQEADGSVK FGHGDGSAYL FDPDIYTDGR ISVQGIDGVL
401: FPKEETPATE IKPAAPVVKK VSKSRRGKLM EVACRMMGSR FIPCQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)