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AT2G28470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-galactosidase 8
Curator
Summary (TAIR10)
putative beta-galactosidase (BGAL8 gene)
Computational
Description (TAIR10)
beta-galactosidase 8 (BGAL8); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta galactosidase 1 (TAIR:AT3G13750.1); Has 2800 Blast hits to 2372 proteins in 478 species: Archae - 15; Bacteria - 1080; Metazoa - 760; Fungi - 211; Plants - 631; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G28470-MONOMERBioCyc:ARA:GQT-1273-MONOMERCAZy:GH35EC:3.2.1.23
eggNOG:COG1874eggNOG:KOG0496EMBL:AC006587EMBL:AJ270304
EMBL:CP002685EMBL:D88744EnsemblPlants:AT2G28470EnsemblPlants:AT2G28470.1
entrez:817395ExpressionAtlas:Q9SCV4Gene3D:2.60.120.260Gene3D:3.20.20.80
GeneID:817395Genevisible:Q9SCV4GO:GO:0004565GO:GO:0005618
GO:GO:0005975GO:GO:0030246GO:GO:0048046hmmpanther:PTHR23421
hmmpanther:PTHR23421:SF58HOGENOM:HOG000239919InParanoid:Q9SCV4InterPro:IPR000922
InterPro:IPR001944InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853
InterPro:IPR019801InterPro:IPR031330KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23
KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23OMA:KMEMILL
PANTHER:PTHR23421PaxDb:Q9SCV4Pfam:PF01301Pfam:PF02140
Pfam:Q9SCV4Pfscan:PS50228PhylomeDB:Q9SCV4PIR:C84685
PRIDE:Q9SCV4PRINTS:PR00742PRO:PR:Q9SCV4PROSITE:PS01182
PROSITE:PS50228ProteinModelPortal:Q9SCV4Proteomes:UP000006548RefSeq:NP_850121.1
scanprosite:PS01182SMR:Q9SCV4STRING:3702.AT2G28470.1SUPFAM:SSF49785
SUPFAM:SSF51445TAIR:AT2G28470tair10-symbols:BGAL8TMHMM:TMhelix
UniGene:At.20550UniGene:At.66398UniProt:Q9SCV4
Coordinates (TAIR10) chr2:-:12169047..12173164
Molecular Weight (calculated) 93214.70 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.22
Length 852 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIAAKMVKV RKMEMILLLI LVIVVAATAA NVTYDHRALV IDGKRKVLIS GSIHYPRSTP EMWPELIQKS KDGGLDVIET YVFWSGHEPE KNKYNFEGRY
101: DLVKFVKLAA KAGLYVHLRI GPYVCAEWNY GGFPVWLHFV PGIKFRTDNE PFKEEMQRFT TKIVDLMKQE KLYASQGGPI ILSQIENEYG NIDSAYGAAA
201: KSYIKWSASM ALSLDTGVPW NMCQQTDAPD PMINTCNGFY CDQFTPNSNN KPKMWTENWS GWFLGFGDPS PYRPVEDLAF AVARFYQRGG TFQNYYMYHG
301: GTNFDRTSGG PLISTSYDYD APIDEYGLLR QPKWGHLRDL HKAIKLCEDA LIATDPTITS LGSNLEAAVY KTESGSCAAF LANVDTKSDA TVTFNGKSYN
401: LPAWSVSILP DCKNVAFNTA KINSATESTA FARQSLKPDG GSSAELGSQW SYIKEPIGIS KADAFLKPGL LEQINTTADK SDYLWYSLRT DIKGDETFLD
501: EGSKAVLHIE SLGQVVYAFI NGKLAGSGHG KQKISLDIPI NLVTGTNTID LLSVTVGLAN YGAFFDLVGA GITGPVTLKS AKGGSSIDLA SQQWTYQVGL
601: KGEDTGLATV DSSEWVSKSP LPTKQPLIWY KTTFDAPSGS EPVAIDFTGT GKGIAWVNGQ SIGRYWPTSI AGNGGCTESC DYRGSYRANK CLKNCGKPSQ
701: TLYHVPRSWL KPSGNILVLF EEMGGDPTQI SFATKQTGSN LCLTVSQSHP PPVDTWTSDS KISNRNRTRP VLSLKCPIST QVIFSIKFAS FGTPKGTCGS
801: FTQGHCNSSR SLSLVQKACI GLRSCNVEVS TRVFGEPCRG VVKSLAVEAS CS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)