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AT2G26970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 3054 Blast hits to 3053 proteins in 1168 species: Archae - 2; Bacteria - 2035; Metazoa - 128; Fungi - 125; Plants - 51; Viruses - 6; Other Eukaryotes - 707 (source: NCBI BLink).
Protein Annotations
EC:3.1.-.-eggNOG:COG1949eggNOG:KOG3242EMBL:AC005623EMBL:AY064031EMBL:BT001963EMBL:CP002685
EnsemblPlants:AT2G26970EnsemblPlants:AT2G26970.1entrez:817238ExpressionAtlas:Q9ZVE0Gene3D:3.30.420.10GeneID:817238Genevisible:Q9ZVE0
GO:GO:0003676GO:GO:0004527hmmpanther:PTHR11046hmmpanther:PTHR11046:SF4HOGENOM:HOG000246596InParanoid:Q9ZVE0InterPro:IPR012337
InterPro:IPR013520OMA:AFFHYRNPaxDb:Q9ZVE0Pfam:PF00929Pfam:Q9ZVE0PhylomeDB:Q9ZVE0PIR:B84667
PRIDE:Q9ZVE0PRO:PR:Q9ZVE0ProteinModelPortal:Q9ZVE0Proteomes:UP000006548RefSeq:NP_850090.1SMART:SM00479SMR:Q9ZVE0
STRING:3702.AT2G26970.1SUPFAM:SSF53098TAIR:AT2G26970UniGene:At.27095UniProt:Q9ZVE0
Coordinates (TAIR10) chr2:-:11509908..11511903
Molecular Weight (calculated) 24933.00 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.30
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKLSNAFSV LAFADEDAPM ASSSSTGKQE ESVNGSLEDG DYKQPLVWID LEMTGLNVEV DRILEIACII TNGDLTQSVE GPDLVVRQTK DCLDKMDDWC
101: QTHHGASGLT KKVLLSAITE REAEQKVIEF VKKHVGSGNP LLAGNSVYVD FLFLKKYMPE LAALFPHILV DVSSVKALCA RWFPIERRKA PAKKNNHRAM
201: DDIRESIKEL KYYKKTIFKA RR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)