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AT2G21950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.983
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SKP1 interacting partner 6
Curator
Summary (TAIR10)
Encodes an SKP1 interacting partner (SKIP6).
Computational
Description (TAIR10)
SKP1 interacting partner 6 (SKIP6); CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39550.1); Has 5633 Blast hits to 4259 proteins in 231 species: Archae - 10; Bacteria - 283; Metazoa - 3617; Fungi - 16; Plants - 1462; Viruses - 63; Other Eukaryotes - 182 (source: NCBI BLink).
Protein Annotations
BioGrid:2084eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AC007019EMBL:AF263382EMBL:AY091137EMBL:AY122967
EMBL:CP002685EnsemblPlants:AT2G21950EnsemblPlants:AT2G21950.1entrez:816731Gene3D:2.130.10.80GeneID:816731Genevisible:Q9SJ04
GO:GO:0016567Gramene:AT2G21950.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF37HOGENOM:HOG000242515InParanoid:Q9SJ04IntAct:Q9SJ04
InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916KEGG:ath:AT2G21950OMA:CGATMANPaxDb:Q9SJ04Pfam:PF00646
Pfam:PF01344Pfam:Q9SJ04PhylomeDB:Q9SJ04PIR:B84607PRIDE:Q9SJ04PRO:PR:Q9SJ04ProteinModelPortal:Q9SJ04
Proteomes:UP000006548RefSeq:NP_565522.1SMART:SM00612SMR:Q9SJ04STRING:3702.AT2G21950.1SUPFAM:0052715TAIR:AT2G21950
tair10-symbols:SKIP6UniGene:At.47529UniGene:At.50089UniPathway:UPA00143UniProt:Q9SJ04
Coordinates (TAIR10) chr2:-:9353526..9354644
Molecular Weight (calculated) 41296.00 Da
IEP (calculated) 8.33
GRAVY (calculated) -0.08
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)