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AT2G03170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SKP1-like 14
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 14 (SK14); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 16 (TAIR:AT2G03190.1); Has 1405 Blast hits to 1401 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 530; Fungi - 176; Plants - 531; Viruses - 11; Other Eukaryotes - 157 (source: NCBI BLink).
Protein Annotations
BioGrid:248DIP:DIP-31332NeggNOG:COG5201eggNOG:KOG1724EMBL:AC005313EMBL:CP002685EMBL:DQ056526
EnsemblPlants:AT2G03170EnsemblPlants:AT2G03170.1entrez:814846GeneID:814846Genevisible:O81057GO:GO:0005634GO:GO:0006511
GO:GO:0016567Gramene:AT2G03170.1hmmpanther:PTHR11165HOGENOM:HOG000172184InParanoid:O81057IntAct:O81057InterPro:IPR001232
InterPro:IPR011333InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897KEGG:ath:AT2G03170KO:K03094OMA:SIVVEYC
PaxDb:O81057Pfam:O81057Pfam:PF01466Pfam:PF03931PhylomeDB:O81057PIR:T02709PIRSF:PIRSF028729
PRIDE:O81057PRO:PR:O81057ProteinModelPortal:O81057Proteomes:UP000006548RefSeq:NP_565296.1SMART:SM00512SMR:O81057
STRING:3702.AT2G03170.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT2G03170tair10-symbols:ASK14tair10-symbols:SK14UniGene:At.52615
UniPathway:UPA00143UniProt:O81057
Coordinates (TAIR10) chr2:+:961322..961771
Molecular Weight (calculated) 17103.20 Da
IEP (calculated) 4.18
GRAVY (calculated) -0.35
Length 149 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSNKIVLSS SDGESFEVEE AVARKLKIVE HMIEDDCVVT EVPLQNVTGK ILSIVVEYCK KHVVDEESDE FKTWDEEFMK KFDQPTVFQL LLAANYLNIK
101: GLLDLSAQTV ADRIKDKTPE EIREIFNIEN DFTPEEEAAV RKENAWAFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)