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AT1G79520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.517
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cation efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G16310.1); Has 4729 Blast hits to 4725 proteins in 1808 species: Archae - 169; Bacteria - 3819; Metazoa - 44; Fungi - 286; Plants - 206; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0053eggNOG:KOG1485EMBL:AC007202EMBL:CP002684
EnsemblPlants:AT1G79520EnsemblPlants:AT1G79520.1entrez:844290ExpressionAtlas:Q9SAJ7
Gene3D:1.20.1510.10Gene3D:3.30.70.1350GeneID:844290Genevisible:Q9SAJ7
GO:GO:0005774GO:GO:0008324GO:GO:0016021hmmpanther:PTHR11562
hmmpanther:PTHR11562:SF20HOGENOM:HOG000205012InParanoid:Q9SAJ7InterPro:IPR002524
InterPro:IPR027469InterPro:IPR027470PANTHER:PTHR11562PaxDb:Q9SAJ7
Pfam:PF01545Pfam:PF16916Pfam:Q9SAJ7PhylomeDB:Q9SAJ7
PIR:E96826PRIDE:Q9SAJ7PRO:PR:Q9SAJ7ProteinModelPortal:Q9SAJ7
Proteomes:UP000006548RefSeq:NP_178070.2SMR:Q9SAJ7STRING:3702.AT1G79520.2
SUPFAM:0054606SUPFAM:SSF160240TAIR:AT1G79520TIGRfam:TIGR01297
TIGRFAMs:TIGR01297TMHMM:TMhelixUniGene:At.43219UniProt:Q9SAJ7
Coordinates (TAIR10) chr1:-:29912369..29914515
Molecular Weight (calculated) 45563.90 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.09
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATEHRGLS GGDYNVDLLP IDQDDSPPSS WRLSLDTFRL PSSSPLSSGR HNGRTRLSRY LRTPKKERKV SEYYKQQEKL LEGFNEMETI NETGFVSGAP
101: TEEELKKLAK SERLAVHISN AANLVLFVAK VYASVESRSM AVIASTLDSL LDLLSGFILW FTANAMRTPN NFRYPIGKRR MQPVGIIVFA SVMATLGLQV
201: ILESTRLLVS KNGSHMSSTE EKWMIGIMAS ATVVKFLLML YCRSFQNEIV RAYAQDHLFD VITNSVGLAT AVLAVKFYWW IDPSGAILIA LYTISTWART
301: VLENVHSLIG RSAPPDFLAK LTFLIWNHHE KIKHIDTVRA YTFGSHYFVE VDIVLPEDMR LHEAHNIGET LQEKLEQLSE VERAFVHIDF EFTHRPEHKC
401: KV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)