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AT1G79470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.827
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aldolase-type TIM barrel family protein; FUNCTIONS IN: IMP dehydrogenase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: oxidation reduction, GMP biosynthetic process, metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990), IMP dehydrogenase related (InterPro:IPR018529), Aldolase-type TIM barrel (InterPro:IPR013785), IMP dehydrogenase/GMP reductase (InterPro:IPR001093), IMP dehydrogenase / GMP reductase, conserved site (InterPro:IPR015875); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G16350.1); Has 13395 Blast hits to 12591 proteins in 2701 species: Archae - 175; Bacteria - 7357; Metazoa - 460; Fungi - 182; Plants - 88; Viruses - 2; Other Eukaryotes - 5131 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G79470-MONOMERBioGrid:29504EC:1.1.1.205eggNOG:COG0516eggNOG:KOG2550EMBL:AC007202EMBL:AF462859
EMBL:BT000820EMBL:CP002684EMBL:L34684EnsemblPlants:AT1G79470EnsemblPlants:AT1G79470.1entrez:844285Gene3D:3.20.20.70
GeneID:844285Genevisible:P47996GO:GO:0003938GO:GO:0005829GO:GO:0006177GO:GO:0046872Gramene:AT1G79470.1
gramene_pathway:1.1.1.205gramene_pathway:DENOVOPURINE3-PWYgramene_pathway:PWY-5695gramene_pathway:PWY-6596gramene_pathway:PWY-841HAMAP:MF_01964HOGENOM:HOG000165752
IntAct:P47996InterPro:IPR001093InterPro:IPR005990InterPro:IPR013785InterPro:IPR015875KEGG:00230+1.1.1.205KEGG:00983+1.1.1.205
KEGG:ath:AT1G79470KO:K00088OMA:NYEQREMPaxDb:P47996Pfam:P47996Pfam:PF00478PhylomeDB:P47996
PIR:JC4999PIRSF:PIRSF000130PRIDE:P47996PRO:PR:P47996PROSITE:PS00487ProteinModelPortal:P47996Proteomes:UP000006548
Reactome:R-ATH-73817RefSeq:NP_178065.1scanprosite:PS00487SMR:P47996STRING:3702.AT1G79470.1SUPFAM:SSF51412SUPFAM:SSF54631
TAIR:AT1G79470TIGRfam:TIGR01302TIGRFAMs:TIGR01302UniGene:At.28603UniPathway:UPA00601UniProt:P47996
Coordinates (TAIR10) chr1:-:29894772..29896661
Molecular Weight (calculated) 54197.00 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.10
Length 503 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTLEDGFPA DKLFAQGYSY TYDDVIFLPH FIDFSTDAVS LSTRLSRRVP LSIPCVSSPM DTVSESHMAA AMASLGGIGI VHYNCGIAAQ ASIIRQAKSL
101: KHPIASDAGV KFPEYEITSL DAFGPSSFVF VEQTGTMTTP KLLGYVTKSQ WKRMNYEQRE MKIYDYMKSC DSSDYCVPWE IDFEKLEFVL EDKQKGFVVL
201: ERDGETVNVV TKDDIQRVKG YPKSGPGTVG PDGEWMVGAA IGTRESDKER LEHLVNVGVN AVVLDSSQGN SIYQLEMIKY VKKTYPELDV IGGNVVTMYQ
301: AQNLIQAGVD GLRVGMGSGS ICTTQEVCAV GRGQATAVYK VCSIAAQSGI PVIADGGISN SGHIVKALVL GASTVMMGSF LAGSTEAPGG YEYTNGKRIK
401: KYRGMGSLEA MTKGSDQRYL GDQTKLKIAQ GVVGAVADKG SVLKLIPYTM HAVKQGFQDL GASSLQSAHG LLRSNILRLE ARTGAAQVEG GVHGLVSYEK
501: KSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)