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AT1G77850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : auxin response factor 17
Curator
Summary (TAIR10)
Posttranscriptionally regulated by miR160 and is essential for proper development.Regulates early auxin response genes.
Computational
Description (TAIR10)
auxin response factor 17 (ARF17); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: anatomical structure morphogenesis, auxin mediated signaling pathway, adventitious root development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 16 (TAIR:AT4G30080.1); Has 1238 Blast hits to 1221 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1226; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:29339eggNOG:ENOG410IJN8eggNOG:ENOG410ZJKKEMBL:AC009243EMBL:AC012193EMBL:AY056184EMBL:BT002749
EMBL:CP002684EMBL:EU550144EMBL:EU550145EMBL:EU550146EMBL:EU550147EMBL:EU550148EMBL:EU550149
EMBL:EU550150EMBL:EU550151EMBL:EU550152EMBL:EU550153EMBL:EU550154EMBL:EU550155EMBL:EU550156
EMBL:EU550157EMBL:EU550158EMBL:EU550159EMBL:EU550160EMBL:EU550161EMBL:EU550162EMBL:EU550163
EMBL:EU550164EMBL:EU550165EMBL:EU550166EMBL:EU550167EnsemblPlants:AT1G77850EnsemblPlants:AT1G77850.1entrez:844120
Gene3D:2.40.330.10GeneID:844120Genevisible:Q84WU6GO:GO:0000987GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009555GO:GO:0009653GO:GO:0009734GO:GO:0010208GO:GO:0048830GO:GO:0052543
Gramene:AT1G77850.1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF19InParanoid:Q84WU6IntAct:Q84WU6InterPro:IPR003340InterPro:IPR010525
InterPro:IPR015300KEGG:ath:AT1G77850OMA:PRIWRACPaxDb:Q84WU6Pfam:PF02362Pfam:PF06507Pfam:Q84WU6
Pfscan:PS50863PhylomeDB:Q84WU6PIR:D96808PRIDE:Q84WU6PRO:PR:Q84WU6PROSITE:PS50863ProteinModelPortal:Q84WU6
Proteomes:UP000006548RefSeq:NP_565161.1SMART:SM01019SMR:Q84WU6STRING:3702.AT1G77850.1SUPFAM:SSF101936TAIR:AT1G77850
tair10-symbols:ARF17UniGene:At.26363UniProt:Q84WU6
Coordinates (TAIR10) chr1:+:29272405..29275193
Molecular Weight (calculated) 63745.30 Da
IEP (calculated) 5.60
GRAVY (calculated) -0.45
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)