AT1G74770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); BEST Arabidopsis thaliana protein match is: zinc ion binding;zinc ion binding (TAIR:AT1G18910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28089695..28094834 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 144930.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1259 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGGGNLHSLP PENASVSASY AVTVGNTKLS DAPVLFFVYC HKAFRAQLVE LRRFATDAAE ADSFSGDLAV ELSRKFEFLK LVYKYHSAAE DEVIFLALDK 0101: RVKNIVSNYS LEHAGTDDLF TSIFHWLHVL EEEIGSRSDV LREVILCIGT IQSSICQHML KEERQVFPLL IEKFSFREQA SLVWQFICSV PVMVLEDFLP 0201: WMISHLSHEE KIEVENCIKD VAPNEDSLQQ VISSWLLDDS QSSCGTPTEI MKGVQYVNVS KSLKKSPESH PSSGCFQRFW EWSKKSLSIP NVGRSPIHGL 0301: RLFQNAIEKD LRDIQEGLCQ AKFQTLILDL DVLMARLNFL ADVLVSYSNA FKKFFHPVLE EMTARRSSTA KQFNIDDCLE NFQRLLYKSA DDKTKTDNFL 0401: LQLQEELESL IIQVTKQFAI QRTEVFPIIS KNCNHEMQKQ LLYTSIHVLP LGLLKCVILW FSAHLSEEES QSILHFLSLE DSSPKKSFPR LLLQWLRFGY 0501: SGKTSVERFW KQLDVMFKVR CSCQKEHTEE ASGSFSNQTQ LQLCKVSKDV YPRKKDKSST CFMSMDLAVG DMYETPYSSR MNQQMTFSGK LKPPLHLPDF 0601: FGEKNMDDPM IMDVKPIDLL FFFHKAMKMD LDYLVCGSTR LAADFRFLAE FQQRFHMIKF LYQIHSDAED EIAFPALEAK GQLKNISHSF SIDHELETKH 0701: FDKVSFILNE MSELNMLVST INTTAADHDR KMKYERLCLS LREICKSMHK LLSEHIQHEE TELWGLFRNC FSIEEQEKII GCMLGRISGE ILQDMIPWLM 0801: ESLTSDEQLA AMSLWRQATR KTMFVEWLTE WYNGHVLQEE AGEANNDPFG DSDPLEIVWK YLFEASADGE KGSMRSSLLK LPKTNFTGIM NQPPPNYKVE 0901: VGKKEEKDLE RSESKKICRG SNQEGDKEQT DKMSQKVSQF GPSKKYEQLL TMSEEELVVV IKKISCDSSL DPQKKDYIKQ NLLMSRWNIS QRTYNLEPSS 1001: LSSNMETVHG QHPSYRDPHS LIFGCNHYKR NCKLLAPCCD KLFTCIRCHD EEADHSVDRK QITKMMCMKC LLIQPIGANC SNTSCKSSMG KYFCKICKLY 1101: DDERKIYHCP YCNLCRVGKG LGIDYFHCMK CNACMSRTLV EHVCREKCLE DNCPICHEYI FTSSSPVKAL PCGHLMHSTC FQEYTCSHYT CPVCSKSLGD 1201: MQVYFKMLDA LLAEEKMPDE YSNKTQVILC NDCGRKGNAP YHWLYHKCTT CGSYNSRLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)