AT1G72100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.616 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : late embryogenesis abundant domain-containing protein / LEA domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
late embryogenesis abundant domain-containing protein / LEA domain-containing protein; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT1G22600.1); Has 5957 Blast hits to 3336 proteins in 883 species: Archae - 38; Bacteria - 2417; Metazoa - 675; Fungi - 389; Plants - 1426; Viruses - 20; Other Eukaryotes - 992 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27127250..27128811 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52706.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.81 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||
| Length | 480 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNLLALCLV LSTLLAAEVW SPSPAMTTHN TAVASEGEVI VKDGHHVVVV EYDRDGKTNT RVSISPPSAD QGEEKENEVE MGTSMFRNVK EKAKETASYL 101: PHVGQGISQP VMTDEARDHH ATAGEVICDA FGKCRQKIAS VVGRAKDRTV DSVGETASDV REAAAHKAHD VKETVTHAAR DVEDTVADQA QYAKGRVTEK 201: AHDPKEGVAH KAHDAKESVA DKAHDAKESV AQKAHDAKEK VREKAHDVKE TVAQKAHESK ERAKDRVREK AQELKETATH KSKNAWERVK NGAREFGSAT 301: AATLSPTKVA SIVGLTGIAA AFGTSVWVTF VSSYVLASVL GRQQFGVVQS KLYPVYFKAT SVGILVGLFG HVLSRRRKLL TDATEMWQGV NLLSSFFMIE 401: ANKSFVEPRA TKAMFERMKA EKEEGRGGER TSEQELRRKL EQLSERLSKL NTYSSWLNIL TLMSLTWHFV YLGQRLGAAC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)