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AT1G68560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:24393051 (2015): extracellular region apoplast
  • PMID:22318864 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:20843791 (2010): plasma membrane
  • PMID:19825673 (2009): extracellular region
  • PMID:19334764 (2009): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alpha-xylosidase 1
Curator
Summary (TAIR10)
Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
Computational
Description (TAIR10)
alpha-xylosidase 1 (XYL1); FUNCTIONS IN: xyloglucan 1,6-alpha-xylosidase activity, xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, xylan catabolic process, xyloglucan metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT3G45940.1); Has 6339 Blast hits to 5059 proteins in 1114 species: Archae - 86; Bacteria - 4145; Metazoa - 817; Fungi - 695; Plants - 269; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G68560-MONOMERBioGrid:28406BRENDA:3.2.1.177CAZy:GH31EC:3.2.1.177eggNOG:COG1501eggNOG:KOG1065
EMBL:AC008075EMBL:AF087483EMBL:AF144078EMBL:AY057482EMBL:BT002675EMBL:CP002684EnsemblPlants:AT1G68560
EnsemblPlants:AT1G68560.1entrez:843185GeneID:843185Genevisible:Q9S7Y7GO:GO:0005618GO:GO:0009044GO:GO:0009505
GO:GO:0009506GO:GO:0009507GO:GO:0010411GO:GO:0030246GO:GO:0045493GO:GO:0046556GO:GO:0046686
GO:GO:0048046GO:GO:0061634GO:GO:0071555GO:GO:0080176Gramene:AT1G68560.1gramene_pathway:3.2.1.20gramene_pathway:PWY-842
hmmpanther:PTHR22762hmmpanther:PTHR22762:SF56HOGENOM:HOG000041175InParanoid:Q9S7Y7IntAct:Q9S7Y7InterPro:IPR000322InterPro:IPR011013
InterPro:IPR017853InterPro:IPR025887InterPro:IPR030458InterPro:IPR031727iPTMnet:Q9S7Y7KEGG:ath:AT1G68560KO:K15925
ncoils:CoilOMA:HARGMKYPaxDb:Q9S7Y7Pfam:PF01055Pfam:PF13802Pfam:PF16863Pfam:Q9S7Y7
PhylomeDB:Q9S7Y7PIR:H96709PRIDE:Q9S7Y7PRO:PR:Q9S7Y7PROSITE:PS00129ProteinModelPortal:Q9S7Y7Proteomes:UP000006548
Reactome:R-ATH-189085Reactome:R-ATH-5357572RefSeq:NP_177023.1scanprosite:PS00129SMR:Q9S7Y7STRING:3702.AT1G68560.1SUPFAM:SSF51011
SUPFAM:SSF51445SUPFAM:SSF74650TAIR:AT1G68560tair10-symbols:ATXYL1tair10-symbols:TRG1tair10-symbols:XYL1UniGene:At.24728
UniProt:Q9S7Y7
Coordinates (TAIR10) chr1:-:25734435..25737897
Molecular Weight (calculated) 102404.00 Da
IEP (calculated) 6.76
GRAVY (calculated) -0.21
Length 915 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)