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AT1G56170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit C2
Curator
Summary (TAIR10)
Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues
Computational
Description (TAIR10)
nuclear factor Y, subunit C2 (NF-YC2); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1485 Blast hits to 1485 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 338; Plants - 429; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
BioGrid:27295eggNOG:COG5208eggNOG:KOG1657EMBL:AC009894EMBL:AC069159EMBL:AY072411EMBL:AY086605
EMBL:AY114704EMBL:CP002684EMBL:Y13725EnsemblPlants:AT1G56170EnsemblPlants:AT1G56170.1EnsemblPlants:AT1G56170.2entrez:842070
Gene3D:1.10.20.10GeneID:842070Genevisible:Q8LCG7GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0005737
GO:GO:0006351GO:GO:0006355GO:GO:0016602GO:GO:0045893Gramene:AT1G56170.1Gramene:AT1G56170.2hmmpanther:PTHR10252
hmmpanther:PTHR10252:SF48HOGENOM:HOG000200436InParanoid:Q8LCG7IntAct:Q8LCG7InterPro:IPR003958InterPro:IPR009072KEGG:ath:AT1G56170
OMA:QEIEHTTPaxDb:Q8LCG7Pfam:PF00808Pfam:Q8LCG7PhylomeDB:Q8LCG7PIR:B96603PRIDE:Q8LCG7
PRO:PR:Q8LCG7ProteinModelPortal:Q8LCG7Proteomes:UP000006548Reactome:R-ATH-2426168RefSeq:NP_001077726.1RefSeq:NP_176013.1SMR:Q8LCG7
STRING:3702.AT1G56170.1SUPFAM:SSF47113TAIR:AT1G56170tair10-symbols:ATHAP5Btair10-symbols:HAP5Btair10-symbols:NF-YC2UniGene:At.25413
UniProt:Q8LCG7
Coordinates (TAIR10) chr1:+:21025118..21025717
Molecular Weight (calculated) 23125.40 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.72
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)