AT1G24706.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : THO2 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
THO2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THO complex, subunitTHOC2, C-region (InterPro:IPR021418), THO complex, subunitTHOC2, N-region (InterPro:IPR021726); Has 19944 Blast hits to 14322 proteins in 730 species: Archae - 16; Bacteria - 829; Metazoa - 10835; Fungi - 2538; Plants - 1298; Viruses - 76; Other Eukaryotes - 4352 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8742210..8755243 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 205735.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.73 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||
| Length | 1804 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSLPLLECKY VTEEFVREGK NGNYGTKLPS SVPMLRFLYE LSWILVRGEL PIQSCKAVLE GVEFLDKPSR EELASCFADV VTQIAQDLTM SGDQRSRLIK 0101: LAKWLVESQT VPQRLFQERC EEEFLWEADM VKIKAQDLKG KEVRLNTRLL YQQTKFNLLR EESEGYAKLA TLLCRGSASS SHNASAATMG IIKSLIGHFD 0201: LDPNRVFDIV LDCFELEQDY DTFLNLIPIF PKSHASQILG FKFQYYQRLE VNSPVPVGLY KLTALLVKEE FINLESIYAH LLPKDEEVFE DYNVSSAKRF 0301: EEANKIGKIN LAATGKDLME DEKQGDVTVD LFAALDMESE AVTERLPELE NNQTLGLLNG FLSVDDWYHA NILFERLAPL NPVAHDQICS GLFRLIEKSI 0401: THSYRIARQT RFQSSSSAST VKLTPTANTT ANRTYLDLPK EVFQMLVTVG PYLYRNTQLL QKICRVLRAY YLSALDLVRD GSNQEGSAYE VSRGHLKEVR 0501: LRVEEALGTC LLPSLQLVPA NPAVGHEIWE VMSLLPYEAR YRLYGEWEKD DEQNPLLLAA RQVAKLDTRR ILKRLAKENL KQLGRMVAKL AHANPMTVLR 0601: TIVNQIEAYR DMIAPVVDAF KYLTQLEYDI LEYVVIERLA QSGRDKLKDD GINLSDWLQS LASFWGHLCK KYPSMELRGL FQYLVNQLKR GQGIELVLLQ 0701: ELVQQMANVQ YTENLTEDQL DAMAGSETLR YHATSFGMMR NNKALIKSSN RLRDSLLPND EPKLAIPLLL LIAQHRSLVV VNADAPYIKM VTEQFDRCHG 0801: ILLQYVDFLS SAVSPTTAYA RLVPSLDELV HTYHLEAEVA FLVFRPVMRL FKCRRNGDVS WPLDSGESMD ADSEISESES SMILDVGTSE KAVTWSDVLD 0901: TVRTMLPSKA WNSLSPDLYA TFWGLTLYDL HVPRNRYESE ISKQHTALKT LEEVADNSSS AITKRKKEKE RIQESLDRLT GELKKHEEHV ASVRRRLSRE 1001: KDTWLSSCPD TLKINMEFLQ RCIFPRCTFS MADSVYCAMF VNMLHSLGTP FFNTVNHIDV LICKTLQPMI CCCTEYEVGR LGRFLFETLK IAYHWKSKES 1101: VYEHECGNMP GFAVYYRYPN SQRVTFGQFV KVHWKWSGRI TRLLIQCLES NEYMEIRNAL IMLTKISGVF PVTRKTGINL EKRATKIKND EREDLKVLAT 1201: GVGAALSARK PHWVTDEEFS MGFLELKAPP VHTPKHASSQ NGLLVGVSQG EPTGERATVN QQPESGGLGK DQMLKTKPLD GRTESIPSKS DQGHLKSKGG 1301: NPLDSQPSIS KKSMEQKETD ETPRISDENP VKPASKYSEA ELKASSKRGA SVNKSAKQDF GKDDGKSGKA IGRTSTADKD LNYLESRQSG LTKALSSTAA 1401: NGSIATGSSK VKDDGAEALD AQKQSSRTVH SPRHEIVTSV RSSDRLQKRA NAVEDSERIS KRRKGDAEHK EHDSEPRSSD RDRSVEARLD LNKTVTDDQS 1501: THRDQDRSKD KGYERQDRDH RERVDRSDKP RGDDVEKARD KSLERHGRER SVEKGLDKGT TRSYDRNKDE RNKDDRSKLR HSEASLEKSH PDDHFHSQGL 1601: PPPPPLPPNI IPHSMAAKED LERRAGGARH SQRLSPRHEE REKRRSEENL SVSVDDAKRR RDDDIRDRKR DDRETITVKG EERERERERE REREKSLPLK 1701: EDFEASKRRK LKREQQVPSA EPGEYSPMPH HSSLSTSMGP SSYEGRERKS SSMIQHGGYL EEPSIRLLGK EASSKMARRD PDPIYDREWE DDKRRAERKR 1801: RDRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)