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AT5G59845.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Gibberellin-regulated family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Gibberellin-regulated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT2G39540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0AYeggNOG:ENOG410YU8REMBL:AB015475EMBL:AK118173
EMBL:AK228548EMBL:AY084760EMBL:CP002688EnsemblPlants:AT5G59845
EnsemblPlants:AT5G59845.1entrez:836106GeneID:836106Genevisible:Q8LFM2
GO:GO:0005576GO:GO:0009740Gramene:AT5G59845.1hmmpanther:PTHR23201
hmmpanther:PTHR23201:SF10HOGENOM:HOG000240234InParanoid:Q8LFM2InterPro:IPR003854
KEGG:ath:AT5G59845OMA:ICCKKCKPaxDb:Q8LFM2Pfam:PF02704
Pfam:Q8LFM2PhylomeDB:Q8LFM2PRIDE:Q8LFM2PRO:PR:Q8LFM2
ProteinModelPortal:Q8LFM2Proteomes:UP000006548RefSeq:NP_568914.1STRING:3702.AT5G59845.1
TAIR:AT5G59845UniGene:At.29201UniProt:Q8LFM2
Coordinates (TAIR10) chr5:+:24111443..24111808
Molecular Weight (calculated) 9746.96 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.21
Length 89 amino acids
Sequence (TAIR10)
(BLAST)
1: MKFPAVKVLI ISLLITSSLF ILSTADSSPC GGKCNVRCSK AGRQDRCLKY CNICCEKCNY CVPSGTYGNK DECPCYRDMK NSKGTSKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)