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AT5G59310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipid transfer protein 4
Curator
Summary (TAIR10)
Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational
Description (TAIR10)
lipid transfer protein 4 (LTP4); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 3 (TAIR:AT5G59320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21294eggNOG:ENOG410J3BEeggNOG:ENOG410YT63EMBL:AB016890
EMBL:AF159801EMBL:AY035015EMBL:AY045644EMBL:AY058233
EMBL:AY059081EMBL:AY088209EMBL:BT002397EMBL:BT006514
EMBL:CP002688EnsemblPlants:AT5G59310EnsemblPlants:AT5G59310.1entrez:836050
GeneID:836050Genevisible:Q9LLR6GO:GO:0006869GO:GO:0008289
GO:GO:0009414GO:GO:0009651GO:GO:0009737Gramene:AT5G59310.1
hmmpanther:PTHR33076hmmpanther:PTHR33076:SF11HOGENOM:HOG000237659InParanoid:Q9LLR6
InterPro:IPR000528InterPro:IPR016140KEGG:ath:AT5G59310OMA:ITCGTVA
PaxDb:Q9LLR6Pfam:PF00234Pfam:Q9LLR6PhylomeDB:Q9LLR6
PRIDE:Q9LLR6PRINTS:PR00382PRO:PR:Q9LLR6PROSITE:PS00597
ProteinModelPortal:Q9LLR6Proteomes:UP000006548RefSeq:NP_568904.1scanprosite:PS00597
SMART:SM00499SMR:Q9LLR6STRING:3702.AT5G59310.1SUPFAM:SSF47699
TAIR:AT5G59310tair10-symbols:LTP4TMHMM:TMhelixUniGene:At.25116
UniProt:Q9LLR6
Coordinates (TAIR10) chr5:-:23925296..23925772
Molecular Weight (calculated) 11406.10 Da
IEP (calculated) 8.84
GRAVY (calculated) 0.52
Length 112 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFALRFFTC FVLTVFIVAS VDAAITCGTV ASSLSPCLGY LSKGGVVPPP CCAGVKKLNG MAQTTPDRQQ ACRCLQSAAK GVNPSLASGL PGKCGVSIPY
101: PISTSTNCAT IK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)