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AT5G58330.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : lactate/malate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
lactate/malate dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity; INVOLVED IN: oxidation reduction, malate metabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NADP-dependent, plants (InterPro:IPR011273), NAD(P)-binding domain (InterPro:IPR016040), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G56720.1); Has 10000 Blast hits to 9996 proteins in 2628 species: Archae - 125; Bacteria - 6319; Metazoa - 780; Fungi - 166; Plants - 568; Viruses - 0; Other Eukaryotes - 2042 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G58330-MONOMERBRENDA:1.1.1.40eggNOG:COG0039eggNOG:KOG1496
EMBL:AK226364EMBL:AY150479EMBL:CP002688EnsemblPlants:AT5G58330
EnsemblPlants:AT5G58330.1entrez:835945ExpressionAtlas:Q8H1E2Gene3D:3.40.50.720
Gene3D:3.90.110.10GeneID:835945GO:GO:0005739GO:GO:0005975
GO:GO:0006108GO:GO:0008746GO:GO:0009507GO:GO:0009570
GO:GO:0009579GO:GO:0009941GO:GO:0046554GO:GO:0048046
GO:GO:0051775Gramene:AT5G58330.1HAMAP:MF_01517hmmpanther:PTHR23382
hmmpanther:PTHR23382:SF0HOGENOM:HOG000220953InterPro:IPR001236InterPro:IPR001252
InterPro:IPR010945InterPro:IPR011273InterPro:IPR015955InterPro:IPR016040
InterPro:IPR022383KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37
KEGG:00620+1.1.1.82KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00710+1.1.1.82KEGG:00720+1.1.1.37OMA:AFSQECIPANTHER:PTHR23382
Pfam:PF00056Pfam:PF02866PhylomeDB:Q8H1E2PROSITE:PS00068
Proteomes:UP000006548RefSeq:NP_851214.1scanprosite:PS00068SMR:Q8H1E2
STRING:3702.AT5G58330.1SUPFAM:SSF51735SUPFAM:SSF56327TAIR:AT5G58330
TIGRfam:TIGR01757TIGRfam:TIGR01759TIGRFAMs:TIGR01757TIGRFAMs:TIGR01759
UniGene:At.71066UniGene:At.9574UniProt:Q8H1E2
Coordinates (TAIR10) chr5:-:23580010..23582287
Molecular Weight (calculated) 48319.00 Da
IEP (calculated) 6.07
GRAVY (calculated) -0.17
Length 443 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)