AT5G54855.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Pollen Ole e 1 allergen and extensin family protein | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||
Computational Description (TAIR10) |
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:+:22282902..22284251 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 16149.20 Da | ||||||||||||||||||||||||
IEP (calculated) | 7.37 | ||||||||||||||||||||||||
GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||
Length | 146 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDSKLRNFVM GLFVMTAILN NSGVGAWTGE IRGRVVCDVC ADSSIGPEDH VLEGAEVAVL CITKSGEVVN YQAFTNSKGV YTVAETMPES ERWDACLARP 101: ISSFHTPCNR LHQTNTGIKF TYNRPSGFFH AVKPFVYRPQ YAPSYC |
||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)