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AT5G02560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histone H2A 12
Curator
Summary (TAIR10)
Encodes HTA12, a histone H2A protein.
Computational
Description (TAIR10)
histone H2A 12 (HTA12); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 6 (TAIR:AT5G59870.1); Has 3926 Blast hits to 3921 proteins in 369 species: Archae - 0; Bacteria - 0; Metazoa - 2576; Fungi - 297; Plants - 619; Viruses - 2; Other Eukaryotes - 432 (source: NCBI BLink).
Protein Annotations
EMBL:BT025612EnsemblPlants:AT5G02560EnsemblPlants:AT5G02560.1entrez:831891
ExpressionAtlas:Q1H552Gene3D:1.10.20.10GeneID:831891GO:GO:0000786
GO:GO:0003677GO:GO:0005634Gramene:AT5G02560.1hmmpanther:PTHR23430
InterPro:IPR002119InterPro:IPR007125InterPro:IPR009072InterPro:IPR032454
Pfam:PF00125Pfam:PF16211Pfam:Q9LZ46PhylomeDB:Q1H552
PRIDE:Q1H552PRIDE:Q9LZ46PRINTS:PR00620ProteinModelPortal:Q1H552
RefSeq:NP_195876.1SMART:SM00414SMR:Q1H552SUPFAM:SSF47113
TAIR:AT5G02560tair10-symbols:HTA12UniGene:At.26889UniProt:Q1H552
UniProt:Q9LZ46
Coordinates (TAIR10) chr5:+:575437..576456
Molecular Weight (calculated) 16219.00 Da
IEP (calculated) 11.48
GRAVY (calculated) -0.50
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSGTKVKKG AAGRRSGGGP KKKPVSRSVK SGLQFPVGRI GRYLKKGRYS KRVGTGAPVY LAAVLEYLAA EVLELAGNAA RDNKKNRIIP RHVLLAVRND
101: EELGTLLKGV TIAHGGVLPN INPILLPKKS EKAASTTKTP KSPSKATKSP KKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)