suba logo
AT5G53740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.911
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: synergid; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53905.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB017066EMBL:CP002688EnsemblPlants:AT5G53740EnsemblPlants:AT5G53740.1
entrez:835455GeneID:835455Gramene:AT5G53740.1hmmpanther:PTHR31181
hmmpanther:PTHR31181:SF51KEGG:ath:AT5G53740Proteomes:UP000006548RefSeq:NP_200185.1
STRING:3702.AT5G53740.1TAIR:AT5G53740UniGene:At.42981UniProt:Q9FI02
Coordinates (TAIR10) chr5:+:21811633..21814908
Molecular Weight (calculated) 30854.00 Da
IEP (calculated) 10.04
GRAVY (calculated) -0.53
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MQLGISIIRS APDASEDNRS RQSRSSRTVM VHQPGFRACL LRNQGNRDLT SLSDCIAARC DSLLLGKSHI INLSKNRRMP FKSRENTIFF SKRRKNSSLC
101: PHCTAPPFQL SPTMLLMFCH DGARLKGMNP RNAEERKYRQ AEGLVTPQFL SIPGSPIDLT KCWSSLLNIQ GCKIEIFKSV FKWNVLLSTQ PLLHTNESNY
201: KTCQTAVRPP QQGRTEPSND PLQHRMRPRT IVAVNHALAA RSWFINQGED GASDGGNEND EDVGMLRDGG YVIVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)