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AT4G15910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : drought-induced 21
Curator
Summary (TAIR10)
encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.
Computational
Description (TAIR10)
drought-induced 21 (DI21); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant 3 (LEA3) family protein (TAIR:AT1G02820.1); Has 120 Blast hits to 120 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J38NeggNOG:ENOG410ZEWFEMBL:BT003165EMBL:CP002687
EMBL:X78585EnsemblPlants:AT4G15910EnsemblPlants:AT4G15910.1entrez:827273
GeneID:827273GO:GO:0005739GO:GO:0009414Gramene:AT4G15910.1
hmmpanther:PTHR33509hmmpanther:PTHR33509:SF6HOGENOM:HOG000237812InterPro:IPR004926
KEGG:ath:AT4G15910OMA:ESAWGPDPfam:PF03242Pfscan:PS51257
PhylomeDB:Q39084PIR:S51479Proteomes:UP000006548RefSeq:NP_193326.4
STRING:3702.AT4G15910.1TAIR:AT4G15910tair10-symbols:ATDI21tair10-symbols:DI21
UniGene:At.48862UniProt:Q39084
Coordinates (TAIR10) chr4:+:9028657..9029269
Molecular Weight (calculated) 10966.10 Da
IEP (calculated) 9.98
GRAVY (calculated) -0.25
Length 104 amino acids
Sequence (TAIR10)
(BLAST)
001: MAARSLSGAV KSLCSAASGS LSCSIVLRRS YVATSQNVTA AGLSKGGSTR VMVGKMEQRG LDQEAESAWG PDPVTGYYRP SNRAAEIDPA ELRELLLKNK
101: AKSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)