AT5G50720.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.583 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : HVA22 homologue E | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
HVA22 homologue E (HVA22E); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue D (TAIR:AT4G24960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:20633442..20634502 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 13476.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.79 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 116 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTKLWTSLSA LHSLAGPVVM LLYPLYASVI AIESPSKVDD EQWLAYWILY SFLTLSELIL QSLLEWIPIW YTAKLVFVAW LVLPQFRGAA FIYNKVVREQ 101: FKKYGILKPK VEHQAE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)