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AT5G50110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: rRNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: rRNA small subunit methyltransferase G (InterPro:IPR003682); Has 6840 Blast hits to 6840 proteins in 2435 species: Archae - 0; Bacteria - 5096; Metazoa - 2; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 1704 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0357eggNOG:ENOG410IFWMEMBL:CP002688EnsemblPlants:AT5G50110
EnsemblPlants:AT5G50110.1entrez:835075Gene3D:3.40.50.150GeneID:835075
GO:GO:0005737GO:GO:0008649Gramene:AT5G50110.1HAMAP:MF_00074
hmmpanther:PTHR31760hmmpanther:PTHR31760:SF0InParanoid:F4K7J0InterPro:IPR003682
InterPro:IPR029063KEGG:ath:AT5G50110KO:K03501OMA:GVYLKHF
PaxDb:F4K7J0Pfam:PF02527PRIDE:F4K7J0ProteinModelPortal:F4K7J0
Proteomes:UP000006548RefSeq:NP_568720.4SMR:F4K7J0STRING:3702.AT5G50110.1
SUPFAM:SSF53335TAIR:AT5G50110TIGRfam:TIGR00138TIGRFAMs:TIGR00138
UniGene:At.29749UniProt:F4K7J0
Coordinates (TAIR10) chr5:+:20373515..20376068
Molecular Weight (calculated) 32492.40 Da
IEP (calculated) 8.42
GRAVY (calculated) -0.10
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSICSFVEN TKKMHCVSHI LSLGHLIKHL PCTKSHTFLR RRFHYKALSN ATVSTTASCF KTLSSSQQDQ IHLYVDTLLQ WNQKMNLTAT KEADEVMERH
101: IEDSLAILPP IKTCYNLHSS DLFDHINLID VGSGAGLPGL VLAIACPDWR VTLLESINKR CVFLEHVVNV TGLTNVTIVR GRAESCGHDV MYREKFDVAI
201: ARAVAEMRVL AEYCLPLVRI GGLFVAAKGH DPKEEVQNAE NAVRLLGGSI LQISPVDSHS PYGQRTTVVC RKDHSTPQKY PREAGTPAKL PL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)