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AT3G52390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.953
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TatD related DNase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TatD related DNase; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro:IPR018228), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: TatD related DNase (TAIR:AT3G03500.1); Has 9584 Blast hits to 9559 proteins in 2684 species: Archae - 131; Bacteria - 6791; Metazoa - 296; Fungi - 190; Plants - 99; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0084eggNOG:KOG3020EMBL:AK228281EMBL:BT005884
EMBL:CP002686EnsemblPlants:AT3G52390EnsemblPlants:AT3G52390.1entrez:824404
ExpressionAtlas:Q84TD7GeneID:824404GO:GO:0016888Gramene:AT3G52390.1
hmmpanther:PTHR10060hmmpanther:PTHR10060:SF15HOGENOM:HOG000201523InterPro:IPR001130
InterPro:IPR018228InterPro:IPR032466KEGG:ath:AT3G52390KO:K03424
PANTHER:PTHR10060Pfam:PF01026PhylomeDB:Q84TD7PIRSF:PIRSF005902
PROSITE:PS01090Proteomes:UP000006548RefSeq:NP_190807.3scanprosite:PS01090
SMR:Q84TD7STRING:3702.AT3G52390.2SUPFAM:SSF51556TAIR:AT3G52390
UniGene:At.65006UniGene:At.71002UniProt:Q84TD7
Coordinates (TAIR10) chr3:-:19423105..19425183
Molecular Weight (calculated) 35694.60 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.31
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLKMIDIA VNFTDGMFKG LYHGKNCHVP DIATVLNRAW SAGVDRIIVT GGSLEESREA LAIAETDGRL FCTVGVHPTR CNEFEESGDP EKHYQALFSL
101: AKEGMQKGKV VAIGECGLDY DRLQFCSVDI QKKYFEKQFE LAYATKLPMF LHMRAAAEDF CEIVERNKNR FTGGVAHSFT GSASDRDKLL SFDKMYLGVN
201: GCSLKTAENL EVMKGIPVER MMIETDSPYC DIKNTHAGIK FVKSTWPSKK KEKYDQESLV KGRNEPCLVR QVLEVVAGYK GLGDLNQVSS TLYHNTCRVF
301: FPQDLDSAAD ALLSGHHETD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)