AT5G49900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.808 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Beta-glucosidase, GBA2 type family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT1G33700.2); Has 905 Blast hits to 755 proteins in 183 species: Archae - 77; Bacteria - 324; Metazoa - 146; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20297235..20302019 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106714.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.72 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 957 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFEEKIMDIG EDVKPLNSSD TKVDPAVPAS LTWQRKIDSD VKAPREFNLS VKEIFQLAPV GIRLWFLCRE EAAKGRLAFI DPFSKHSVTS SHGVPLGGIG 101: AGSIGRSFKG EFQRWQLFPP KCEDEPVLAN QFSAFVSRAN GKKYSSVLCP RNPKLDKQDS ESGIGSWDWN LKGDKSTYHA LYPRSWTMYE GEPDPELRIV 201: CRQVSPFIPH NYKESSFPVS VFTFTLHNLG NTTADVTLLF TWANSVGGDS EFSGGHYNSK ITMNDGVQGV LLHHKTANGL PSLSYAISAQ ATDGVSVSAC 301: PFFIVSGKQD GITAKDMWQA VKENGSFDHL KASEASMQSD HGSSIGAAVA ASVTVLPGES RIVTFSLAWD CPEVQFPSGK IYSRRYTKFY GNNGDAAAQI 401: AHDAILGHSQ WESWIEDWQR PILEDKRLPA WYPVTLFNEL YYLNSGGTLW TDGSSPVHSL AGVREKKFSL DKSQLGLKND IDVPHQNDTA VSVLEKMAST 501: LEELHASTTS NSAFGTKLLE EGEENIGHFL YLEGIEYRMW NTYDVHFYAS FALVMLFPKL ELSIQRDFAA AVMLHDPTKV KTLSEGQWVQ RKVLGAVPHD 601: LGINDPWFEV NGYTLHNTDR WKDLNPKFVL QVYRDVVATG DKKFASAVWP SVYVAMAYMA QFDKDGDGMI ENEGFPDQTY DTWSASGVSA YCGGLWVAAL 701: QAASALARVV GDKNSQDYFW SKFQKAKVVY EKKLWNGSYF NYDNSGSQYS STIQADQLAG QWYARASGLL PIVDEDKART ALEKVYNYNV MKIKDGKRGA 801: VNGMHPNGKV DTASMQSREI WSGVTYALSA TMIQEGLVEM AFQTASGIYE AAWSETGLGY SFQTPESWNT VDEYRSLTYM RPLAIWAMQW ALTKTSQKQE 901: QLGLEPEQQE PELEPSSSMK HDIGFSRVSR LLSLPNEASA KSTLQTLFDY TCRRMMS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)