AT5G45940.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:peroxisome 0.990 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : nudix hydrolase homolog 11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a CoA pyrophosphatase, also has minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
nudix hydrolase homolog 11 (NUDT11); FUNCTIONS IN: hydrolase activity, NAD+ diphosphatase activity, CoA pyrophosphatase activity; INVOLVED IN: multicellular organismal development; LOCATED IN: cytosol; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 15 (TAIR:AT1G28960.5); Has 3666 Blast hits to 3665 proteins in 1325 species: Archae - 59; Bacteria - 2305; Metazoa - 169; Fungi - 188; Plants - 101; Viruses - 0; Other Eukaryotes - 844 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:18629665..18630597 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 25680.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.72 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 222 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSSTTTDSTE LQNLIKLFQN CQTHPRQHFP AKSSAVLVCL YQEQREDKNE LRVILTKRST TLSSHPGEVA LPGGKRDQED KDDIATALRE AREEIGLDPS 101: LVTIISVLEP FVNKKGMSVA PVIGFLHDKK AFKQLPNPAE VEEIFDVPLE MFLKDRNRRA EEREHEGERY LLQYFDYYSE DKERSFIIWA LTAGILIRVA 201: SIVYQRLPEF QERKPSFWNQ PN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)