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AT5G44390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon, embryo, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44400.1); Has 8763 Blast hits to 8674 proteins in 1286 species: Archae - 135; Bacteria - 4861; Metazoa - 111; Fungi - 1786; Plants - 808; Viruses - 0; Other Eukaryotes - 1062 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G44390-MONOMEReggNOG:COG0277eggNOG:ENOG410IEZVEMBL:AB011475
EMBL:CP002688EnsemblPlants:AT5G44390EnsemblPlants:AT5G44390.1entrez:834465
Gene3D:3.30.465.10GeneID:834465GO:GO:0016021GO:GO:0016614
GO:GO:0050660Gramene:AT5G44390.1hmmpanther:PTHR32448hmmpanther:PTHR32448:SF11
InterPro:IPR006094InterPro:IPR012951InterPro:IPR016166InterPro:IPR016169
KEGG:ath:AT5G44390OMA:MIQYYRSPfam:PF01565Pfam:PF08031
Pfscan:PS51387PhylomeDB:Q9FKU9PROSITE:PS51387Proteomes:UP000006548
RefSeq:NP_199252.1SMR:Q9FKU9STRING:3702.AT5G44390.1SUPFAM:SSF56176
TAIR:AT5G44390TMHMM:TMhelixUniGene:At.26608UniProt:Q9FKU9
Coordinates (TAIR10) chr5:-:17882329..17884906
Molecular Weight (calculated) 61486.00 Da
IEP (calculated) 9.55
GRAVY (calculated) -0.27
Length 542 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNSKPLPTI SCISVFALYF SFYTITLTSS TSLQDDFIKC LYRNTNVRFT LDKTFFTPER NASIFTEVLE STAQNQRYLT KTMPKPGFIF KPVHESHVQA
101: SVICSKKLEI HFRVRSGGHD YEGVSYVSQI EKPFVLIDLS KLRQINVDIK DTSAWVEAGA TVGELYYRIA EKSKFHGFPA GVYPSLGIGG HITGGAYGSL
201: MRKYGLAADN VLDAKIVDAN GKLLDRASMG EDLFWAIRGG SGGSFGIILS WKIKLVPVPE TLTVFTVTKT FEQDRSFKIL SKWQEIADNL VDELFLRVFF
301: TVSGNKANKT VTMAYIGQFL GEKGTLMEVM KKDFPELGLT QKDCIEMSWI DSIIYNSGFP TNPPPPIEIL LQAKSPIGKV YFKGKSDFAK KPIPVLGLEG
401: MFKKLLEEDA ALVIWTPYGG KMDKIPESEI PFPHRNGTNF MIQYYRSWSD SEKRPNRRTK WIRELYGYMT PYVSSNPRQA YVNYRDLDLG QNKDNSKSNF
501: IEAKIWGANY FKDNFNRLVR IKSKVDPDNF FRHEQSIPTL PV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)