AT5G43300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.524 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PLC-like phosphodiesterases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 1140 Blast hits to 1098 proteins in 389 species: Archae - 24; Bacteria - 458; Metazoa - 238; Fungi - 178; Plants - 103; Viruses - 2; Other Eukaryotes - 137 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17376946..17379070 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42295.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.88 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 370 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALETMTLSL SSSAMLSSGV VEDDKKQEAI VFPKFVLMGH RGFGMNMLQS PDEKMKFIKE NSLLSFNVAA DFPIDFIEFD VQVTRDGCPV IFHDIFMFTQ 101: EQGVIIEKRV TEMDLHEFLS YGPQRDGTNV KPMWRKTKDG RIFEWKVEKD DPLCTLEDAF LNVKHSLGFN IELKFDDNTV YGEGELRQTL DNILTVVNEH 201: SKNRPIIFSS FHPDAARLIR NMQRCYPVFF LTNGGCEIYK DVRRNSLDEA IKLCKESGLQ GLVSEVKAIL RTPNAITRVK DSKLSLLSYG QLNNVVEVIY 301: LQYLMGVEGV IVDMVKDISE AIANIEVTNE DDCEGEDERK CLIRFGEERK KVEITKDMIT LLNKFVPKLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)