AT5G42660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.611 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF616) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF616); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT2G02910.1); Has 345 Blast hits to 345 proteins in 43 species: Archae - 14; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17103062..17105785 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53064.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.07 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||
| Length | 463 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFNNNSVSIS VSDDESNDLN RIRARTRRKR KKVSHRTSYE LPRHVLRLFV RYWVVLVFLL AVGLLVFEST RIGFKSSDLK KPDLNGKESP SKKNEGNLNR 101: LDPTTKVIGG VRQRCLKLLP PEELEHLDIL ERKDSGSPVK RVVYLTDTDV SVGEMRGVRG NGTRFNLFTG NQTFAERENS FQVRETVSLH CGFFNENGGF 201: RISDKDKKFM TSCEVVVSTC AFGGGDNLYE PIGMSKTSSQ KVCYVAFWDE VTLTTQEAEG HKIDENDHIG KWRIVIVKDL PFTDQRLNGK IPKMLAHRLF 301: PDAKYSIWVD SKSQFRRDPL GVLDALLWRT NSVLAISEHG ARSSVYDEAN AVIKKHKATP EEVEVQINQY RHDKLPEDKR FNGKKALSEA SVIVREHTPL 401: TNLFMCLWFN EVVRFTSRDQ LSFPYVLWRL KVLKNINMFP VCTRKDLVNS IGHVRKAKPL VTL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)