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AT5G37850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pfkB-like carbohydrate kinase family protein
Curator
Summary (TAIR10)
Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.
Computational
Description (TAIR10)
SALT OVERLY SENSITIVE 4 (SOS4); FUNCTIONS IN: pyridoxal kinase activity, kinase activity; INVOLVED IN: pyridoxine biosynthetic process, hyperosmotic salinity response, trichoblast differentiation, pyridoxal 5'-phosphate salvage; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase (InterPro:IPR004625), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); BEST Arabidopsis thaliana protein match is: thiamin biosynthesis protein, putative (TAIR:AT1G22940.1); Has 6182 Blast hits to 6179 proteins in 1931 species: Archae - 81; Bacteria - 5137; Metazoa - 195; Fungi - 190; Plants - 75; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1103-MONOMERBioCyc:ARA:GQT-2581-MONOMERBioGrid:19014BRENDA:2.7.1.35
EC:2.7.1.35eggNOG:COG2240eggNOG:KOG2599EMBL:AB012241
EMBL:AF400125EMBL:AF404865EMBL:AY084419EMBL:AY136333
EMBL:BT008815EMBL:CP002688EnsemblPlants:AT5G37850EnsemblPlants:AT5G37850.1
EnsemblPlants:AT5G37850.2entrez:833763ExpressionAtlas:Q8W1X2Gene3D:3.40.1190.20
GeneID:833763Genevisible:Q8W1X2GO:GO:0005524GO:GO:0005829
GO:GO:0008478GO:GO:0008615GO:GO:0009443GO:GO:0010054
GO:GO:0016310GO:GO:0042538GO:GO:0046872gramene_plant_reactome:1119303
gramene_plant_reactome:1119534gramene_plant_reactome:6873889gramene_plant_reactome:6875242hmmpanther:PTHR10534
hmmpanther:PTHR10534:SF2HOGENOM:HOG000258174InParanoid:Q8W1X2InterPro:IPR004625
InterPro:IPR013749InterPro:IPR029056KEGG:00750+2.7.1.35KEGG:ath:AT5G37850
KO:K00868OMA:YVPQELIPANTHER:PTHR10534PaxDb:Q8W1X2
Pfam:PF08543Pfam:Q8W1X2PhylomeDB:Q8W1X2PRIDE:Q8W1X2
PRO:PR:Q8W1X2ProteinModelPortal:Q8W1X2Proteomes:UP000006548Reactome:R-ATH-964975
RefSeq:NP_001078677.1RefSeq:NP_198601.2SMR:Q8W1X2STRING:3702.AT5G37850.1
SUPFAM:SSF53613TAIR:AT5G37850tair10-symbols:ATSOS4tair10-symbols:SOS4
TIGRfam:TIGR00687TIGRFAMs:TIGR00687UniGene:At.28304UniPathway:UPA01068
UniProt:Q8W1X2
Coordinates (TAIR10) chr5:+:15065394..15068783
Molecular Weight (calculated) 38168.90 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.20
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MPFSFPTTTT TSLPFHKDHN HFNLNRNLRS RNRRMTTPPV LSLALPSDTG RVLSIQSHTV QGYVGNKSAV FPLQLLGYDV DPINSVQFSN HTGYPTFKGQ
101: VLNGQQLCDL IEGLEANDLL FYTHVLTGYI GSVSFLDTIL EVINKLRSVN PNLTYVCDPV MGDEGKLYVP EELVHVYREK VVPLASMLTP NQFEAEKLTG
201: LRINSEEDGR EACAILHAAG PSKVVITSIT IGGILLLIGS HQKEKGLKPE QFKILIHKIP AYFTGTGDLM TALLLGWSNK YPDNLDKAAE LAVSTLQALL
301: RRTLDDYKRA GYDPTSSSLE IRLIQSQEDI RNPKVELKAE RYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)