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AT5G36160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tyrosine transaminase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tyrosine transaminase family protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity; INVOLVED IN: tyrosine catabolic process to phosphoenolpyruvate, cellular amino acid and derivative metabolic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT5G53970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G36160-MONOMERBRENDA:2.6.1.5EC:2.6.1.5eggNOG:COG0436
eggNOG:KOG0259EMBL:AB018112EMBL:AY062825EMBL:AY081649
EMBL:CP002688EnsemblPlants:AT5G36160EnsemblPlants:AT5G36160.1entrez:833613
Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:833613Genevisible:Q9LVY1
GO:GO:0004838GO:GO:0005829GO:GO:0006520GO:GO:0006559
GO:GO:0009058GO:GO:0030170GO:GO:0080130Gramene:AT5G36160.1
hmmpanther:PTHR11751hmmpanther:PTHR11751:SF363HOGENOM:HOG000239005InParanoid:Q9LVY1
InterPro:IPR004839InterPro:IPR005958InterPro:IPR015421InterPro:IPR015422
InterPro:IPR015424KEGG:ath:AT5G36160KO:K00815OMA:PQGAMYV
PaxDb:Q9LVY1Pfam:PF00155Pfam:Q9LVY1PhylomeDB:Q9LVY1
PIRSF:PIRSF000517PRIDE:Q9LVY1PRO:PR:Q9LVY1ProteinModelPortal:Q9LVY1
Proteomes:UP000006548Reactome:R-ATH-71182RefSeq:NP_198465.3SMR:Q9LVY1
STRING:3702.AT5G36160.1SUPFAM:SSF53383TAIR:AT5G36160TIGRfam:TIGR01265
TIGRFAMs:TIGR01265UniGene:At.48051UniPathway:UPA00139UniProt:Q9LVY1
Coordinates (TAIR10) chr5:-:14233261..14235129
Molecular Weight (calculated) 46452.10 Da
IEP (calculated) 4.64
GRAVY (calculated) 0.06
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MGENGAKRWN FGANEVVERS NSLTIRDYLN TLINCLDGGD VRPVIPLGHG DPSPFPSFRT DQAAVEAICD AVRSTKFNNY SSSSGVPVAR KAVAEYLSSD
101: LSYQISPNDV HITAGCVQAI EILISALAIP GANILLPRPT YPMYDSRAAF CQLEVRYFDL LPENGWDVDL DGVEALADDK TVAILVINPC NPCGNVFSRQ
201: HLQKIAETAC KLGILVIADE VYDHFAFGDK PFVSMAEFAE LVPVIVLGAI SKRWFVPGWR LGWMVTLDPH GIMKDSGFVQ TLINVVNMST DPATFIQGAM
301: PDIIGNTKEE FFSSKLEMVK KCAEICYEEL MKIPCITCPC KPEGSMFTMV KLNFSLLEDI SDDLDFCSKL AKEESMIILP GQAVGLKNWL RITFAVELEL
401: LIEGFSRLKN FTERHSKNQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)