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AT5G23535.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : KOW domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
KOW domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824), Ribosomal protein L24 (InterPro:IPR003256); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT5G54600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0198eggNOG:KOG1708EMBL:AB025633EMBL:AK227904
EMBL:BT011601EMBL:BT012239EMBL:CP002688EnsemblPlants:AT5G23535
EnsemblPlants:AT5G23535.1entrez:832419Gene3D:2.30.30.30GeneID:832419
GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT5G23535.1
HAMAP:MF_01326_Bhmmpanther:PTHR12903HOGENOM:HOG000039891InterPro:IPR003256
InterPro:IPR005824InterPro:IPR005825InterPro:IPR008991InterPro:IPR014722
KEGG:ath:AT5G23535KO:K02895OMA:SGKDKGCPfam:PF00467
Pfam:PF17136PhylomeDB:Q9LT09PROSITE:PS01108Proteomes:UP000006548
RefSeq:NP_680212.1scanprosite:PS01108SMART:SM00739SMR:Q9LT09
STRING:3702.AT5G23535.1SUPFAM:SSF50104TAIR:AT5G23535TIGRfam:TIGR01079
TIGRFAMs:TIGR01079UniGene:At.44055UniProt:Q9LT09
Coordinates (TAIR10) chr5:+:7935871..7937127
Molecular Weight (calculated) 17499.40 Da
IEP (calculated) 10.76
GRAVY (calculated) -0.51
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)