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AT5G23020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-isopropylmalate synthase 2
Curator
Summary (TAIR10)
methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis.
Computational
Description (TAIR10)
2-isopropylmalate synthase 2 (IMS2); CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: methylthioalkylmalate synthase 1 (TAIR:AT5G23010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G23020-MONOMERBRENDA:2.3.3.13EC:2.3.3.-eggNOG:COG0119
eggNOG:KOG2367EMBL:AB006708EMBL:AF327648EMBL:AJ131518
EMBL:AJ421793EMBL:AJ486937EMBL:AJ486938EMBL:AJ486939
EMBL:AJ486940EMBL:AJ486941EMBL:AJ486942EMBL:AJ486943
EMBL:AJ486944EMBL:AJ486945EMBL:AJ486946EMBL:AJ486947
EMBL:AJ486948EMBL:AJ486949EMBL:AJ486950EMBL:AJ486951
EMBL:AJ486952EMBL:AJ486953EMBL:AM180570EMBL:AM180573
EMBL:AY099549EMBL:BT008874EMBL:CP002688EnsemblPlants:AT5G23020
EnsemblPlants:AT5G23020.1entrez:832366Gene3D:3.20.20.70GeneID:832366
Genevisible:Q9FN52GO:GO:0003852GO:GO:0009098GO:GO:0009507
GO:GO:0010177GO:GO:0019761Gramene:AT5G23020.1gramene_pathway:2.3.3.-
gramene_pathway:PWY-1186gramene_pathway:PWYQT-4450hmmpanther:PTHR10277hmmpanther:PTHR10277:SF9
InParanoid:Q9FN52InterPro:IPR000891InterPro:IPR002034InterPro:IPR013785
iPTMnet:Q9FN52KEGG:00290+2.3.3.13KEGG:00620+2.3.3.13KEGG:ath:AT5G23020
KO:K15742OMA:ICAGARQPaxDb:Q9FN52Pfam:PF00682
Pfam:Q9FN52Pfscan:PS50991PhylomeDB:Q9FN52PRIDE:Q9FN52
PRO:PR:Q9FN52PROSITE:PS00815PROSITE:PS00816PROSITE:PS50991
ProteinModelPortal:Q9FN52Proteomes:UP000006548RefSeq:NP_197693.1scanprosite:PS00815
scanprosite:PS00816SMR:Q9FN52STRING:3702.AT5G23020.1SUPFAM:SSF51569
TAIR:AT5G23020tair10-symbols:IMS2tair10-symbols:MAM-Ltair10-symbols:MAM3
UniGene:At.20469unipathway:UPA00048UniProt:Q9FN52
Coordinates (TAIR10) chr5:+:7718203..7721634
Molecular Weight (calculated) 55232.70 Da
IEP (calculated) 7.19
GRAVY (calculated) -0.23
Length 503 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLLLTSSS MITTSCRSMV LRSGLPIGSS FPSLRLTRPY DKATLFVSCC SAESKKVATS ATDLKPIMER RPEYIPNKLP HKNYVRVLDT TLRDGEQSPG
101: AALTPPQKLE IARQLAKLRV DIMEVGFPVS SEEEFEAIKT IAKTVGNEVD EETGYVPVIC GIARCKKRDI EATWEALKYA KRPRVMLFTS TSEIHMKYKL
201: KKTKEEVIEM AVNSVKYAKS LGFKDIQFGC EDGGRTEKDF ICKILGESIK AGATTVGFAD TVGINMPQEF GELVAYVIEN TPGADDIVFA IHCHNDLGVA
301: TANTISGICA GARQVEVTIN GIGERSGNAP LEEVVMALKC RGESLMDGVY TKIDSRQIMA TSKMVQEHTG MYVQPHKPIV GDNCFVHESG IHQDGILKNR
401: STYEILSPED VGIVKSENSG IVLGKLSGRH AVKDRLKELG YEISDEKFND IFSRYRELTK DKKRITDADL KALVVNGAEI SSEKLNSKGI NDLMSSPQIS
501: AVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)