AT5G22090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.872 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3049) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3049); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT4G02810.1); Has 1373 Blast hits to 1137 proteins in 167 species: Archae - 0; Bacteria - 105; Metazoa - 552; Fungi - 104; Plants - 212; Viruses - 21; Other Eukaryotes - 379 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7315003..7316394 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51448.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.57 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||
| Length | 463 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMACGLSKSL GLSSSLKKQQ GIVSILGGIS SNTSSAPSLR RTFSADLSSK TWVSQNGFSP MKRISSSEKL RPDEEEAEEE SRSGVDIWAQ IQQDKNDKKK 101: EEEIEPGQSD VWSSILSEKK KTESSKDTVP PPYVHPLMKR ASSLSEKSLE ICTESLGSET GCDGFSSHAS SETGDAEIEI HDETNLVVNV TETKVEEITE 201: TEIVVEQESS IIVPNHIIEL PPGSFPPPIR SLSSQSGSSL HMKTRRDNGR LVLEAVSMPS HNNFSAKRQD GRLLLTFAEI SNEPNYDKED EIDSEVQWFD 301: EEEEEEEEEE DEEEEAPDEF AYKPNGLLYK MAQKPIPITV HRLAHKPIGV PKRNSRWPMA DEFDTKSDLS TPVVHSLPPR PRVAQLARST KPPSTVDDTV 401: GAACFNTCDY SWKSTNTESF GPNTKTQFQA QNFVNKSMGD GWINGCKDRR RSLLSVEPFC IAT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)